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PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files
C++
204
53
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LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files
Perl
207
44
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Multi-level visualization of genomic statistical variables on rectangular chromosomes
Perl
110
13
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A Toolkit for analyzing next-generation DNA Re-Sequencing data
85
29
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VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Format
C++
104
21
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BamDeal: a comprehensive toolkit for bam manipulation
C++
54
19
Repositories
Showing 10 of 14 repositories
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RectChr
Public
Multi-level visualization of genomic statistical variables on rectangular chromosomes
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VCF2Dis
Public
VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Format
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LDBlockShow
Public
LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files
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PopLDdecay
Public
PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files
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BamDeal
Public
BamDeal: a comprehensive toolkit for bam manipulation
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fqcheck
Public
Forked from
hewm2008/fqcheck
fqcheck: A new simple and efficient software to stat base and quality distribution of fq file
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FxTools
Public
FxTools: a comprehensive toolkit for FASTA and FASTQ file manipulation
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Reseqtools
Public
A Toolkit for analyzing next-generation DNA Re-Sequencing data
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gcaPDA
Public
gamete cell assisted chromosome-scale phased diploid assembler
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RRSelection
Public
RRSelection: A linkage disequilibrium method to detect selection region across population VCF
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