Voozh

VOOZH

URL: https://github.com/EichlerLab

⇱ Eichler Lab · GitHub

Popular repositories Loading

pav Public

Phased assembly variant caller

Python 139 10
smrtsv2 Public

Structural variant caller

Python 55 6
svpop Public

Variant annotation and merging pipeline

Python 43 8
pacbio_variant_caller Public archive

SMRT-SV: Structural variant and indel caller for PacBio reads

Python 28 15
CDR-Finder Public

Workflow to identify the centromere dip regions (CDR) from methyl BAMs

Python 14 3
vcf-flow Public

Forked from huddlej/tab-to-vcf

Convert tab-delimited file into a VCF

Python 8 2

Repositories

Showing 10 of 84 repositories

Rhodonite_eichler Public

Perl 0 MIT 0 0 0 Updated
docker_hub Public
Repository for Automated Docker Builds with Docker Hub

Python 1 0 0 0 Updated
sedef_smk Public
A snakemake pipeline for SEDEF.

Python 0 MIT 0 0 0 Updated
assembly_qc Public Forked from youngjun0827/assembly_qc
assembly QC pipeline starts with foreign contamination screening

Python 1 1 0 0 Updated
sample-id-check Public
Snakemake pipeline for running ntsm to check sample contaminations

Python 0 0 0 0 Updated
compteam_tools Public
A collection of custom scripts for everyday long read analysis

Python 0 0 0 0 Updated
assembly_eval Public

Python 3 0 0 0 Updated
long_read_downsampling Public
Support for quality trimming and downsampling from the longest reads for reads used in assembly construction.

Python 0 0 0 0 Updated
basecall_dorado Public
Snakemake repository for basecalling with dorado

Python 0 0 0 0 Updated
subseq-smk Public
Snakemake pipeline which leverages subseq to validate structural variants

Python 0 MIT 0 0 0 Updated

View all repositories

People

You can’t perform that action at this time.