Pinned Loading
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diffusion-fit Public
Extract estimates of dye/peptide diffusion coefficients and loss rates from a time-sequence of fluorescence images.
Python
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extracellular-models Public
Reaction-diffusion models to simulate the dynamics of fluorescent dyes and peptides in the brain extracellular space implemented using the extracellular simulator in NEURON.
Python 1
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NP-array-heating-simulator Public
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Collection of pharmacodynamic response models, including dose-response, inhibitor-response, and various receptor-response models that can be fit to response data.
Repositories
- pharmacodynamic-response-models Public
Collection of pharmacodynamic response models, including dose-response, inhibitor-response, and various receptor-response models that can be fit to response data.
- diffusion-fit Public
Extract estimates of dye/peptide diffusion coefficients and loss rates from a time-sequence of fluorescence images.
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- peptide-property-app Public
Used peptides.py to predict peptide properties from the amino acid sequence.
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- extracellular-models Public
Reaction-diffusion models to simulate the dynamics of fluorescent dyes and peptides in the brain extracellular space implemented using the extracellular simulator in NEURON.
- lammps_output_analysis Public
Python tools to parse, post-process, and analyze outputs from LAMMPS commands.
- aunp-fragmentation-model-and-fitting Public archive
Fragmentation distribution fitting and model analysis for our paper Kang et al. J. Phys. Chem. C 2021, 125, 48, 26718–26730
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- roi-plotter Public
A streamlit app to read cell ROI data from csv files and plot the fluorescence traces.
People
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