Workshop for calisim: A toolbox for the calibration and evaluation of simulation models.

A toolbox for the calibration and evaluation of simulation models.

Nitrogen balance model components and test procedures

Assumptions tracking for WOFOST Potato using behaviour-driven development.

A Nextflow pipeline for genome and pan-genome annotation

Workshop on pipeline development and model deployment onto Kubernetes via Docker using R.

Code for the manuscript "TEgenomeSimulator: A Flexible Framework for Simulating Genomes with Configurable Transposable Element Landscapes."

TEgenomeSimulator: A tool to simulate TE mutation and insertion into a random-synthesised or user-provided genome.

A Nextflow pipeline for evaluating assembly quality

Code to reproduce the results presented in Angelin-Bonnet et al, 2025 "moiraine: an R package to construct reproducible pipelines for the application and comparison of multi-omics integration methods".