Skip to content
You signed in with another tab or window. to refresh your session.
You signed out in another tab or window. to refresh your session.
You switched accounts on another tab or window. to refresh your session.
👋 Welcome to the BIDS Apps github organization 👋
Click the following link if you want to view the BIDS Apps website.
If you want to learn more about BIDS in general, have a look at the
bids-standard GitHub organization.
For generic BIDS related question use the
NeuroStars Discourse Forum, under the bids
tag.
Otherwise, feel free to open an
issue
on any of those repositories if you have specific questions or requests, or register
more BIDS Apps by adding them to
apps.yml.
As a reminder, all contributors have to adhere to our
Code of Conduct.
Pinned
Loading
-
Dockerfile templates commonly used in BIDS Apps
Dockerfile
11
6
-
This an example app that can serve as a template.
Python
17
33
Repositories
Showing 10 of 43 repositories
-
rsHRF
Public
Resting state HRF estimation from BOLD-fMRI signal
-
cat12
Public
BIDS app version of the CAT12 toolbox
Python
1
MIT
0
7
2
Updated
-
-
MRtrix3_connectome
Public
Generate subject connectomes from raw BIDS data & perform inter-subject connection density normalisation, using the MRtrix3 software package.
Python
54
Apache-2.0
28
42
4
Updated
-
SPM
Public
BIDS App containing an instance of the SPM software.
MATLAB
15
Apache-2.0
11
4
6
Updated
-
example
Public template
This an example app that can serve as a template.
Python
17
Apache-2.0
33
3
0
Updated
-
afni_proc
Public
prototype AFNI bids app implmenting participant level preprocessing with afni_proc.py
HTML
2
Apache-2.0
4
4
1
Updated
-
-
mindboggle
Public
Improve the accuracy, precision, and consistency of automated labeling and shape analysis of human brain image data
Python
5
Apache-2.0
4
9
1
Updated
-
freesurfer
Public
BIDS app wrapping recon-all from FreeSurfer
You can’t perform that action at this time.
