Voozh

Tools for inferring some missing metadata about an entity from other present metadata fields

Currently MCP-oriented.

Looking into the limits of

inspired by

For evaluating the performance of these and similar MCP servers, try https://github.com/ai4curation/metacoder

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ols-mcp Public

An MCP for retrieving information from the Ontology Lookup Service

Python 7 2
cyberian Public

A Python CLI wrapper for running AI coder agents (claude code, gemini-cli, etc)

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artl-mcp Public archive

ARCHIVED - replaced by contextualizer-ai/artl-mcp

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mcp_literature_eval Public

Evaluation of MCPs that retrieve scientific literature

Jupyter Notebook 2
gene-function-review Public

Forked from ai4curation/ai-gene-review

Demonstration of AI review of existing functional annotations

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landuse-mcp Public

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Showing 10 of 16 repositories

env-embeddings Public
Simple experiment to compare ENVO similarity to google embedding cosine similarity

Jupyter Notebook 0 BSD-3-Clause 0 15 4 Updated
cyberian Public
A Python CLI wrapper for running AI coder agents (claude code, gemini-cli, etc)

Python 5 BSD-3-Clause 1 1 7 Updated
mcp_literature_eval Public
Evaluation of MCPs that retrieve scientific literature

Jupyter Notebook 2 BSD-3-Clause 0 2 5 Updated
biosample-enricher Public
Infer AI-friendly environmental and geographic metadata about biosamples from multiple authoritative sources

Python 0 BSD-3-Clause 0 61 0 Updated
artl-mcp Public archive
ARCHIVED - replaced by contextualizer-ai/artl-mcp

Python 2 MIT 0 42 1 Updated
to-duckdb Public
tools for converting content in other databases (like Biosamples in MongoDB) to DuckDB

Makefile 0 BSD-3-Clause 0 7 0 Updated
fitness-mcp Public
Example mcp to query a file for growth conditions about a gene/locus ID

Python 0 0 9 1 Updated
.github Public

0 0 0 0 Updated
gene-function-review Public Forked from ai4curation/ai-gene-review
Demonstration of AI review of existing functional annotations

JavaScript 1 BSD-3-Clause 4 2 0 Updated
gold-tools Public
tools for ingesting GOLD metadata (Biosamples, Studies, Projects) into MongoDB and flattening into something like DuckDB or Parquet. Adds some semantic realignment.

0 BSD-3-Clause 0 2 0 Updated