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Welcome to the geneontology GitHub organization!
The Gene Ontology (GO) knowledgebase is the world’s largest source of information on the functions of genes.
This knowledge is both human-readable and machine-readable, and is a foundation for computational analysis of large-scale molecular biology and genetics experiments in biomedical research.
For more information, please see our website, http://geneontology.org/.
Overview of some of the key repositories in this organization:
- geneontology.github.io - GO documentation
- go-ontology - Source ontology files for the Gene Ontology.
This is primarily for the developers of the GO and contains the source code for the GO ontology.
To download ontology files, please use the Downloads menu on our website.
- go-annotation - Issues about GO annotations (manual & automated)
- go-site - Metadata, tools, and files associated with the Gene Ontology website
- noctua - Graph-based modeling / editing tools for biology
- helpdesk - A place for the GO community to ask for help or report issues.
Getting help
If you have general questions about GO, check our Frequently Asked Questions.
If you have a specific question about GO, its data, usage, software, or services, please create a ticket in our discussion tracker.
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The Gene Ontology Helpdesk
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Announcements related to ontology changes that may impact groups using GO, such as obsoletions, merges, etc.
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Repository for storing GO documentation, directly available through the general GO site
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Source ontology files for the Gene Ontology
Makefile
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This repository hosts the tracker for issues pertaining to GO annotations.
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A collection of metadata, tools, and files associated with the Gene Ontology public web presence.
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Repositories
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noctua-models
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This is the data repository for the models created and edited with the Noctua tool stack for GO.
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go-ontology
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Source ontology files for the Gene Ontology
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pipeline-from-goa
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The new GO pipeline that runs after GOA has made QC file products available.
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go-site
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A collection of metadata, tools, and files associated with the Gene Ontology public web presence.
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gocam-py
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Draft data model for GO-CAMs
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TypeScript
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go-annotation
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This repository hosts the tracker for issues pertaining to GO annotations.
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annotation-query
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This is a repository for doing the queries like go-annotation, but with nobody following it
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