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MS Amanda is a scoring system to identify peptides out of tandem mass spectrometry data using a database of known proteins.
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MS Andrea is an open modification search engine that is designed to directly identify peptide modifications on the PSM level.
3
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MS Annika is a crosslink search engine based on MS Amanda, aimed at identifying crosslinks of cleavable and non-cleavable crosslinkers from MS2 and MS3 spectra.
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List of all available extensions for our cross-linking search engine MS Annika.
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Generate a spectral library for Spectronaut from MS Annika results.
Python
1
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A python package to process protein cross-linking data.
Python
4
Repositories
Showing 10 of 31 repositories
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MSAndrea
Public
MS Andrea is an open modification search engine that is designed to directly identify peptide modifications on the PSM level.
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MSAnnika
Public
MS Annika is a crosslink search engine based on MS Amanda, aimed at identifying crosslinks of cleavable and non-cleavable crosslinkers from MS2 and MS3 spectra.
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Python
0
MIT
1
0
0
Updated
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pyXLMS-template
Public template
A template repository for python scripts and projects using pyXLMS.
Python
0
MIT
0
0
0
Updated
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Jupyter Notebook
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MIT
0
0
0
Updated
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pyXLMS
Public
A python package to process protein cross-linking data.
Python
4
MIT
0
5
0
Updated
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Python
0
MIT
1
0
0
Updated
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TMT
Public
TMTpro-18plex quantification for [single cell] DIA and DDA searches with Chimerys, Spectronaut, and DIA-NN.
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MSAmanda
Public
MS Amanda is a scoring system to identify peptides out of tandem mass spectrometry data using a database of known proteins.
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