This repository contains the code associated with the project "Improving Disease Document Labeling in CaseOLAP LIFT via Topic Modeling" Joanne Qiu Alexander Pelletier Ping Lab UCLA Cardiovascular Data Science Summer Internship Program September 15, 2023

Ping Lab Intern Project, Summar, 2022: 👁 :octocat:
Link prediction through Graph Neural Network (GNN) model over the Knowledgegraph in the interface of Cardiovascular Disease (CVD) and Drugs.

This repository contains the code and input data for the multi-omics proteomics integration project.

Samir (akre96): Implementation of the caseOLAP pipeline for mapping relationships between oxidative stress and drugs.

Ping Lab Intern Project, Summar, 2022: 👁 :octocat:
Mapping MeSH (ICD codes) to molecular mechanism through protein-protein co-occurance graph -toward high precission medicine

Ping Lab Intern Project, Summar, 2022: 👁 :octocat:
Building Named Entity Recognition model with fine tuning BioBERT - a data engineering approach

Building a bioinformatics tool for generating a more reliable protein sequence database for Sus scrofa cardiac proteomics studies

By Irsyad: 👁 :octocat:
The project documentation and codes in the study of ion-channel in OS-CVD categories implementing graph data API. Summer 2021.

Match UnitRef Protein IDs to CVD disease categories with their corresponding CaseOLAP scores