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URL: https://github.com/snijderlab

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Snijderlab

Part of the research group Biomolecular Mass Spectrometry and Proteomics under professor Albert J. R. Heck in the Chemistry Department of Utrecht Univeristy, the Netherlands.

The lab of Joost Snijder combining techniques to study viruses and their host interactions. The techniques used the most are mass spectroscopy and cryo-em microscopy. This github organisation is how we organise our code. The code is mainly centred around the tool Stitch which is used for antibody de novo sequencing with bottom up mass spectrometry.

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  1. stitch Public

    Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling

    C# 30 3

  2. annotator Public

    A simple tool to help you manually discover the depths of your (complex) spectra, one spectrum at a time.

    Rust 35 3

  3. align-cli Public

    A CLI for pairwise alignment of sequences, using both normal and mass based alignment.

    Rust 15

Repositories

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