SYNOPSIS

#documentation needed

DESCRIPTION

This stores information about aminoacids translations of transcripts. The implementation is that a Translation object is the translation of a Transcript object, with different possibilities of manipulation, different coordinate system and eventually its own ranges (protein domains).

AUTHOR - Joseph A.L. Insana

Email: [email protected], [email protected]

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

new

 Title : new
 Usage : $protein = Bio::LiveSeq::Translation->new(-transcript => $transcr);
 Function: generates a new Bio::LiveSeq::Translation
 Returns : reference to a new object of class Translation
 Errorcode -1
 Args : reference to an object of class Transcript

get_Transcript

 Title : valid
 Usage : $transcript = $obj->get_Transcript()
 Function: retrieves the reference to the object of class Transcript (if any)
 attached to a LiveSeq object
 Returns : object reference
 Args : none

aa_ranges

 Title : aa_ranges
 Usage : @proteinfeatures = $translation->aa_ranges()
 Function: to retrieve all the LiveSeq AARange objects attached to a
 Translation, usually created out of a SwissProt database entry
 crossreferenced from an EMBL CDS feature.
 Returns : an array
 Args : none