Computational Neuroscience
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1,146 reviews
1,146 reviews
Skills you'll gain
- Biology
- Neurology
- Electrophysiology
- Probability Distribution
- Recurrent Neural Networks (RNNs)
- Machine Learning Algorithms
- Machine Learning Methods
- Mathematical Modeling
- Supervised Learning
- Differential Equations
- Physiology
- Sensory Systems Analysis
- Network Analysis
- Reinforcement Learning
- Network Model
- Artificial Neural Networks
Tools you'll learn
Details to know
9 assignments
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There are 8 modules in this course
This course provides an introduction to basic computational methods for understanding what nervous systems do and for determining how they function. We will explore the computational principles governing various aspects of vision, sensory-motor control, learning, and memory. Specific topics that will be covered include representation of information by spiking neurons, processing of information in neural networks, and algorithms for adaptation and learning. We will make use of Matlab/Octave/Python demonstrations and exercises to gain a deeper understanding of concepts and methods introduced in the course. The course is primarily aimed at third- or fourth-year undergraduates and beginning graduate students, as well as professionals and distance learners interested in learning how the brain processes information.
This module includes an Introduction to Computational Neuroscience, along with a primer on Basic Neurobiology.
What's included
6 videos5 readings2 assignments
6 videosβ’Total 89 minutes
- 1.1 Course Introductionβ’4 minutes
- 1.2 Computational Neuroscience: Descriptive Modelsβ’12 minutes
- 1.3 Computational Neuroscience: Mechanistic and Interpretive Modelsβ’13 minutes
- 1.4 The Electrical Personality of Neuronsβ’23 minutes
- 1.5 Making Connections: Synapsesβ’20 minutes
- 1.6 Time to Network: Brain Areas and their Functionβ’17 minutes
5 readingsβ’Total 50 minutes
- Welcome Message & Course Logisticsβ’10 minutes
- About the Course Staffβ’10 minutes
- Week 1 Lecture Notesβ’10 minutes
- Matlab Information and Tutorialsβ’10 minutes
- Python Information and Tutorialsβ’10 minutes
2 assignmentsβ’Total 60 minutes
- Matlab/Octave Programmingβ’30 minutes
- Python Programmingβ’30 minutes
This module introduces you to the captivating world of neural information coding. You will learn about the technologies that are used to record brain activity. We will then develop some mathematical formulations that allow us to characterize spikes from neurons as a code, at increasing levels of detail. Finally we investigate variability and noise in the brain, and how our models can accommodate them.
What's included
8 videos1 reading1 assignment
8 videosβ’Total 167 minutes
- 2.1 What is the Neural Code?β’19 minutes
- 2.2 Neural Encoding: Simple Modelsβ’12 minutes
- 2.3 Neural Encoding: Feature Selectionβ’22 minutes
- 2.4 Neural Encoding: Variabilityβ’24 minutes
- Vectors and Functions (by Rich Pang)β’30 minutes
- Convolutions and Linear Systems (by Rich Pang)β’16 minutes
- Change of Basis and PCA (by Rich Pang)β’19 minutes
- Welcome to the Eigenworld! (by Rich Pang)β’24 minutes
1 readingβ’Total 10 minutes
- Week 2 Lecture Notes and Tutorialsβ’10 minutes
1 assignmentβ’Total 60 minutes
- Spike Triggered Averages: A Glimpse Into Neural Encoding β’60 minutes
In this module, we turn the question of neural encoding around and ask: can we estimate what the brain is seeing, intending, or experiencing just from its neural activity? This is the problem of neural decoding and it is playing an increasingly important role in applications such as neuroprosthetics and brain-computer interfaces, where the interface must decode a person's movement intentions from neural activity. As a bonus for this module, you get to enjoy a guest lecture by well-known computational neuroscientist Fred Rieke.
What's included
6 videos1 reading1 assignment
6 videosβ’Total 114 minutes
- 3.1 Neural Decoding and Signal Detection Theoryβ’19 minutes
- 3.2 Population Coding and Bayesian Estimationβ’25 minutes
- 3.3 Reading Minds: Stimulus Reconstructionβ’12 minutes
- Fred Rieke on Visual Processing in the Retinaβ’14 minutes
- Gaussians in One Dimension (by Rich Pang)β’31 minutes
- Probability distributions in 2D and Bayes' Rule (by Rich Pang)β’14 minutes
1 readingβ’Total 10 minutes
- Week 3 Lecture Notes and Supplementary Materialβ’10 minutes
1 assignmentβ’Total 30 minutes
- Neural Decodingβ’30 minutes
This module will unravel the intimate connections between the venerable field of information theory and that equally venerable object called our brain.
What's included
5 videos1 reading1 assignment
5 videosβ’Total 98 minutes
- 4.1 Information and Entropyβ’19 minutes
- 4.2 Calculating Information in Spike Trainsβ’17 minutes
- 4.3 Coding Principlesβ’19 minutes
- What's up with entropy? (by Rich Pang)β’26 minutes
- Information theory? That's crazy! (by Rich Pang)β’17 minutes
1 readingβ’Total 10 minutes
- Week 4 Lecture Notes and Supplementary Materialβ’10 minutes
1 assignmentβ’Total 60 minutes
- Information Theory & Neural Codingβ’60 minutes
This module takes you into the world of biophysics of neurons, where you will meet one of the most famous mathematical models in neuroscience, the Hodgkin-Huxley model of action potential (spike) generation. We will also delve into other models of neurons and learn how to model a neuron's structure, including those intricate branches called dendrites.
What's included
7 videos1 reading1 assignment
7 videosβ’Total 114 minutes
- 5.1 Modeling Neuronsβ’14 minutes
- 5.2 Spikesβ’14 minutes
- 5.3 Simplified Model Neuronsβ’19 minutes
- 5.4 A Forest of Dendritesβ’19 minutes
- Eric Shea-Brown on Neural Correlations and Synchronyβ’23 minutes
- Dynamical Systems Theory Intro Part 1: Fixed points (by Rich Pang)β’12 minutes
- Dynamical Systems Theory Intro Part 2: Nullclines (by Rich Pang)β’13 minutes
1 readingβ’Total 10 minutes
- Week 5 Lecture Notes and Supplementary Materialβ’10 minutes
1 assignmentβ’Total 90 minutes
- Computing in Carbonβ’90 minutes
This module explores how models of neurons can be connected to create network models. The first lecture shows you how to model those remarkable connections between neurons called synapses. This lecture will leave you in the company of a simple network of integrate-and-fire neurons which follow each other or dance in synchrony. In the second lecture, you will learn about firing rate models and feedforward networks, which transform their inputs to outputs in a single "feedforward" pass. The last lecture takes you to the dynamic world of recurrent networks, which use feedback between neurons for amplification, memory, attention, oscillations, and more!
What's included
3 videos1 reading1 assignment
3 videosβ’Total 72 minutes
- 6.1 Modeling Connections Between Neuronsβ’24 minutes
- 6.2 Introduction to Network Modelsβ’22 minutes
- 6.3 The Fascinating World of Recurrent Networksβ’26 minutes
1 readingβ’Total 10 minutes
- Week 6 Lecture Notes and Tutorialsβ’10 minutes
1 assignmentβ’Total 60 minutes
- Computing with Networksβ’60 minutes
This module investigates models of synaptic plasticity and learning in the brain, including a Canadian psychologist's prescient prescription for how neurons ought to learn (Hebbian learning) and the revelation that brains can do statistics (even if we ourselves sometimes cannot)! The next two lectures explore unsupervised learning and theories of brain function based on sparse coding and predictive coding.
What's included
4 videos1 reading1 assignment
4 videosβ’Total 86 minutes
- 7.1 Synaptic Plasticity, Hebb's Rule, and Statistical Learningβ’24 minutes
- 7.2 Introduction to Unsupervised Learningβ’22 minutes
- 7.3 Sparse Coding and Predictive Codingβ’24 minutes
- Gradient Ascent and Descent (by Rich Pang)β’16 minutes
1 readingβ’Total 10 minutes
- Week 7 Lecture Notes and Tutorialsβ’10 minutes
1 assignmentβ’Total 60 minutes
- Networks that Learnβ’60 minutes
In this last module, we explore supervised learning and reinforcement learning. The first lecture introduces you to supervised learning with the help of famous faces from politics and Bollywood, casts neurons as classifiers, and gives you a taste of that bedrock of supervised learning, backpropagation, with whose help you will learn to back a truck into a loading dock.The second and third lectures focus on reinforcement learning. The second lecture will teach you how to predict rewards Γ la Pavlov's dog and will explore the connection to that important reward-related chemical in our brains: dopamine. In the third lecture, we will learn how to select the best actions for maximizing rewards, and examine a possible neural implementation of our computational model in the brain region known as the basal ganglia. The grand finale: flying a helicopter using reinforcement learning!
What's included
4 videos1 reading1 assignment
4 videosβ’Total 79 minutes
- 8.1 Neurons as Classifiers and Supervised Learningβ’26 minutes
- 8.2 Reinforcement Learning: Predicting Rewardsβ’13 minutes
- 8.3 Reinforcement Learning: Time for Action!β’20 minutes
- Eb Fetz on Bidirectional Brain-Computer Interfacesβ’20 minutes
1 readingβ’Total 10 minutes
- Week 8 Lecture Notes and Supplementary Materialβ’10 minutes
1 assignmentβ’Total 60 minutes
- Learning from Supervision and Rewardsβ’60 minutes
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Johns Hopkins University
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Johns Hopkins University
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Hebrew University of Jerusalem
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University of Colorado Boulder
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Reviewed on Jun 14, 2017
This course is an excellent introduction to the field of computational neuroscience, with engaging lectures and interesting assignments that make learning the material easy.
Reviewed on May 17, 2020
Excellent course! The field of comp neuro was brough to life by the instructors! The exercises really helped in understanding the content.
Reviewed on Mar 2, 2019
Great course! Really enjoyed the variety of topics and the just enough computational work in the quiz's. And that Eigen hat had me smiling and laughing about it for a week.
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