Introduction to Statistics & Data Analysis in Public Health
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Introduction to Statistics & Data Analysis in Public Health
This course is part of Statistical Analysis with R for Public Health Specialization
Instructor: Alex Bottle
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What you'll learn
Defend the critical role of statistics in modern public health research and practice
Describe a data set from scratch, including data item features and data quality issues, using descriptive statistics and graphical methods in R
Select and apply appropriate methods to formulate and examine statistical associations between variables within a data set in R
Interpret the output from your analysis and appraise the role of chance and bias
Skills you'll gain
- Statistical Methods
- Data Literacy
- Statistical Programming
- Statistical Analysis
- Statistical Hypothesis Testing
- Data Import/Export
- Descriptive Statistics
- Probability & Statistics
- Sampling (Statistics)
- Statistical Inference
- Probability Distribution
- Statistics
- Science and Research
- Public Health
- Analytical Skills
- Data Analysis
Tools you'll learn
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There are 4 modules in this course
Welcome to Introduction to Statistics & Data Analysis in Public Health!
This course will teach you the core building blocks of statistical analysis - types of variables, common distributions, hypothesis testing - but, more than that, it will enable you to take a data set you've never seen before, describe its keys features, get to know its strengths and quirks, run some vital basic analyses and then formulate and test hypotheses based on means and proportions. You'll then have a solid grounding to move on to more sophisticated analysis and take the other courses in the series. You'll learn the popular, flexible and completely free software R, used by statistics and machine learning practitioners everywhere. It's hands-on, so you'll first learn about how to phrase a testable hypothesis via examples of medical research as reported by the media. Then you'll work through a data set on fruit and vegetable eating habits: data that are realistically messy, because that's what public health data sets are like in reality. There will be mini-quizzes with feedback along the way to check your understanding. The course will sharpen your ability to think critically and not take things for granted: in this age of uncontrolled algorithms and fake news, these skills are more important than ever. Prerequisites Some formulae are given to aid understanding, but this is not one of those courses where you need a mathematics degree to follow it. You will need only basic numeracy (for example, we will not use calculus) and familiarity with graphical and tabular ways of presenting results. No knowledge of R or programming is assumed.
Statistics has played a critical role of in public health research and practice, and you’ll start by looking at two examples: one from eighteenth century London and the other by the United Nations. The first task in carrying out a research study is to define the research question and express it as a testable hypothesis. With examples from the media, you’ll see what does and does not work in this regard, giving you a chance to define a research question from some real news stories.
What's included
5 videos7 readings2 assignments2 discussion prompts1 plugin
5 videos•Total 23 minutes
- Introduction to Statistical Thinking for Public Health•5 minutes
- Uses of Statistics in Public Health•6 minutes
- Introduction to Sampling•4 minutes
- How to Formulate a Research Question•4 minutes
- Formulating a research question for the Parkinson's disease and supplement studies•5 minutes
7 readings•Total 80 minutes
- About Imperial College & the Team•10 minutes
- How to be successful in this course•10 minutes
- Grading policy•10 minutes
- Data set and Glossary•10 minutes
- Additional Reading•10 minutes
- John Snow and the Cholera outbreak of 1849•20 minutes
- Instructions for Quiz•10 minutes
2 assignments•Total 75 minutes
- Parkinson's Disease Study Issues•15 minutes
- Research Question Formulation•60 minutes
2 discussion prompts•Total 30 minutes
- Nice to meet you!•10 minutes
- Parkinson's Disease Treatment Reports•20 minutes
1 plugin•Total 15 minutes
- Complete our short pre-course survey•15 minutes
This module will introduce you to some of the key building blocks of knowledge in statistical analysis: types of variables, common distributions and sampling. You’ll see the difference between “well-behaved” data distributions, such as the normal and the Poisson, and real-world ones that are common in public health data sets.
What's included
6 videos3 readings5 assignments3 discussion prompts
6 videos•Total 34 minutes
- Introduction to variables, distribution and sampling•6 minutes
- Overview of types of variables•4 minutes
- Well-behaved Distributions•7 minutes
- Real-world Distributions and their Problems•5 minutes
- The Role of Sampling in Public Health Research•8 minutes
- How to choose a Sample•4 minutes
3 readings•Total 40 minutes
- Types of variables and the special case of age•10 minutes
- More on the 95% Confidence Interval•10 minutes
- Using your sample to estimate the population mean•20 minutes
5 assignments•Total 85 minutes
- Types of variables•20 minutes
- Special case of age•20 minutes
- Well-behaved Distributions•20 minutes
- Ways of Dealing with Weird Data•15 minutes
- Sampling•10 minutes
3 discussion prompts•Total 65 minutes
- Share and Reflect: Mortality Data•15 minutes
- Share and Reflect: Estimating the distribution•20 minutes
- Ways of selecting samples•30 minutes
Now it’s time to get started with the powerful and completely free statistical software R and its popular interface RStudio. With the example of fruit and vegetable consumption, you’ll learn how to download R, import the data set and run essential descriptive analyses to get to know the variables.
What's included
2 videos10 readings2 assignments1 discussion prompt
2 videos•Total 20 minutes
- How to describe distributions of real data•7 minutes
- How to Load Data and run Basic Tabulations in R•14 minutes
10 readings•Total 110 minutes
- How to Calculate Percentiles•10 minutes
- Introduction to R•20 minutes
- R Resources•10 minutes
- Practice with R: Perform Descriptive Analysis•10 minutes
- Feedback: Descriptive Analysis•10 minutes
- How to judge visually if a variable is normally distributed in R•10 minutes
- Practice with R - trying it out for yourself•10 minutes
- Extra features in R•10 minutes
- Practice with R: Extra features•10 minutes
- Feedback: Extra features•10 minutes
2 assignments•Total 40 minutes
- Calculations: Percentiles by Hand•20 minutes
- Distributions and Medians•20 minutes
1 discussion prompt•Total 15 minutes
- Share and Reflect: Results of the Descriptive Analysis•15 minutes
Having learned how to define a research question and testable hypothesis earlier in the course, you’ll learn how to apply hypothesis testing in R and interpret the result. As all medical knowledge is derived from a sample of patients, random and other kinds of variation mean that what you measure on that sample, such as the average body mass index, is not necessarily the same as in the population as a whole. It’s essential that you incorporate this uncertainty in your estimate of average BMI when presenting it. This involves the calculation of a p value and confidence interval, fundamental concepts in statistical analysis. You’ll see how to do this for averages and proportions.
What's included
4 videos14 readings5 assignments2 discussion prompts1 plugin
4 videos•Total 20 minutes
- Sampling errors for proportions and central limit theorem•6 minutes
- Hypothesis Testing•6 minutes
- Choosing the Sample Size for your Study•5 minutes
- Summary of Course•3 minutes
14 readings•Total 170 minutes
- The Coin Tossing Experiment: Part I•10 minutes
- The Coin Tossing Experiment: Part II•10 minutes
- The Coin Tossing Experiment: Feedback•20 minutes
- Degrees of Freedom •20 minutes
- The chi-squared test with fruit and veg•20 minutes
- Feedback: Sample Size and Variation•10 minutes
- Comparing Two Means•10 minutes
- Practice with R: Hypothesis Testing•10 minutes
- Feedback: Hypothesis Testing in R•10 minutes
- The Difference between t-test and Chi-squared test•10 minutes
- Practice with R: Running a New Hypothesis Test•10 minutes
- P values and Thresholds•10 minutes
- Deaths data set for the end-of-course Assessment•10 minutes
- Final R code•10 minutes
5 assignments•Total 95 minutes
- Hypothesis Testing•10 minutes
- The Coin Tossing Experiment: Evaluation•30 minutes
- Results: Running a New Hypothesis Test•20 minutes
- Hypothesis Testing•15 minutes
- End-of-course Assessment•20 minutes
2 discussion prompts•Total 20 minutes
- Share and Discuss: Sample Size and Variation•10 minutes
- Share and Reflect: Results of Hypothesis Testing in R•10 minutes
1 plugin•Total 15 minutes
- Post-Course Survey•15 minutes
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Reviewed on Sep 15, 2021
a methodical way to understand statistics although focus is public health. the lecture open your prospctive to other industries in subtle ways, I also recommend ICL courses.
Reviewed on May 8, 2023
The Journey was excellent. I have learned a lot from this course. I will suggest the course to everyone interested. I will you will have a great learning. Happy Learning...
Reviewed on Aug 13, 2020
Excellent course with really good teaching. Felt like it developed a good grounding in the basic topics. Would recommend having a little R experience prior to taking this course.
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