Logistic Regression in R for Public Health
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Logistic Regression in R for Public Health
This course is part of Statistical Analysis with R for Public Health Specialization
Instructor: Alex Bottle
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What you'll learn
Describe a data set from scratch using descriptive statistics and simple graphical methods as a first step for advanced analysis using R software
Interpret the output from your analysis and appraise the role of chance and bias as potential explanations
Run multiple logistic regression analysis in R and interpret the output
Evaluate the model assumptions for multiple logistic regression in R
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8 assignments
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There are 4 modules in this course
Welcome to Logistic Regression in R for Public Health!
Why logistic regression for public health rather than just logistic regression? Well, there are some particular considerations for every data set, and public health data sets have particular features that need special attention. In a word, they're messy. Like the others in the series, this is a hands-on course, giving you plenty of practice with R on real-life, messy data, with predicting who has diabetes from a set of patient characteristics as the worked example for this course. Additionally, the interpretation of the outputs from the regression model can differ depending on the perspective that you take, and public health doesnβt just take the perspective of an individual patient but must also consider the population angle. That said, much of what is covered in this course is true for logistic regression when applied to any data set, so you will be able to apply the principles of this course to logistic regression more broadly too. By the end of this course, you will be able to: Explain when it is valid to use logistic regression Define odds and odds ratios Run simple and multiple logistic regression analysis in R and interpret the output Evaluate the model assumptions for multiple logistic regression in R Describe and compare some common ways to choose a multiple regression model This course builds on skills such as hypothesis testing, p values, and how to use R, which are covered in the first two courses of the Statistics for Public Health specialisation. If you are unfamiliar with these skills, we suggest you review Statistical Thinking for Public Health and Linear Regression for Public Health before beginning this course. If you are already familiar with these skills, we are confident that you will enjoy furthering your knowledge and skills in Statistics for Public Health: Logistic Regression for Public Health. We hope you enjoy the course!
Welcome to Statistics for Public Health: Logistic Regression for Public Health! In this week, you will be introduced to logistic regression and its uses in public health. We will focus on why linear regression does not work with binary outcomes and on odds and odds ratios, and you will finish the week by practising your new skills. By the end of this week, you will be able to explain when it is valid to use logistic regression, and define odds and odds ratios. Good luck!
What's included
3 videos7 readings2 assignments2 discussion prompts1 plugin
3 videosβ’Total 12 minutes
- Welcome to the Courseβ’3 minutes
- Introduction to Logistic Regressionβ’5 minutes
- Odds and Odds Ratiosβ’4 minutes
7 readingsβ’Total 55 minutes
- About Imperial College & the teamβ’5 minutes
- How to be successful in this courseβ’5 minutes
- Grading policyβ’5 minutes
- Data set and Glossaryβ’10 minutes
- Additional Readingβ’10 minutes
- Why does linear regression not work with binary outcomes?β’10 minutes
- Odds Ratios and Examples from the Literatureβ’10 minutes
2 assignmentsβ’Total 20 minutes
- End of Week Quizβ’10 minutes
- Logistic Regressionβ’10 minutes
2 discussion promptsβ’Total 20 minutes
- Nice to meet you!β’10 minutes
- Whatβs Your Experience of Logistic Regression?β’10 minutes
1 pluginβ’Total 15 minutes
- Complete our short pre-course surveyβ’15 minutes
In this week, you will learn how to prepare data for logistic regression, how to describe data in R, how to run a simple logistic regression model in R, and how to interpret the output. You will also have the opportunity to practise your new skills. By the end of this week, you will be able to run simple logistic regression analysis in R and interpret the output. Good luck!
What's included
2 videos4 readings2 assignments1 discussion prompt
2 videosβ’Total 11 minutes
- Preparing the Data For Logistic Regressionβ’5 minutes
- Logistic Regression in Rβ’6 minutes
4 readingsβ’Total 90 minutes
- How to Describe Data in Rβ’20 minutes
- Results of Cross Tabulationβ’20 minutes
- Practice in R: Simple Logistic Regressionβ’15 minutes
- Feedback - Output and Interpretation from Simple Logistic Regressionβ’35 minutes
2 assignmentsβ’Total 60 minutes
- Interpreting Simple Logistic Regressionβ’30 minutes
- Cross Tabulationβ’30 minutes
1 discussion promptβ’Total 15 minutes
- Share and Reflect: Results of the Simple Logistic Regressionβ’15 minutes
Now that you're happy with including one predictor in the model, this week you'll learn how to run multiple logistic regression, including describing and preparing your data and running new logistic regression models. You will have the opportunity to practise your new skills. By the end of the week, you will be able to run multiple logistic regression analysis in R and interpret the output. Good luck!
What's included
1 video6 readings1 assignment2 discussion prompts
1 videoβ’Total 4 minutes
- How to Run Multiple Logistic Regression in Rβ’4 minutes
6 readingsβ’Total 100 minutes
- Describing your Data and Preparing to Run Multiple Logistic Regressionβ’35 minutes
- Practice in R: Describing Variablesβ’20 minutes
- Feedbackβ’20 minutes
- Practice in R: Running Multiple Logistic Regressionβ’15 minutes
- Feedback: Multiple Regression Modelβ’0 minutes
- Feedback on the Assessmentβ’10 minutes
1 assignmentβ’Total 30 minutes
- Running A New Logistic Regression Modelβ’30 minutes
2 discussion promptsβ’Total 35 minutes
- Share and Reflect: Describing Variables and R Analysesβ’20 minutes
- Share and Reflect: What do the regression results mean?β’15 minutes
Welcome to the final week of the course! In this week, you will learn how to assess model fit and model performance, how to avoid the problem of overfitting, and how to choose what variables from your data set should go into your multiple regression model. You will put all the skills you have learned throughout the course into practice. By the end of this week, you will be able to evaluate the model assumptions for multiple logistic regression in R, and describe and compare some common ways to choose a multiple regression model. Good luck!
What's included
3 videos10 readings3 assignments1 discussion prompt1 plugin
3 videosβ’Total 17 minutes
- Choosing a Logistic Regression Modelβ’7 minutes
- Overfitting and Non-convergenceβ’6 minutes
- Summary of the Courseβ’3 minutes
10 readingsβ’Total 180 minutes
- Model Fit in Logistic Regressionβ’10 minutes
- How to Interpret Model Fit and Performance Information in Rβ’10 minutes
- Further Reading on Model Fitβ’20 minutes
- Summary of Different Ways to Run Multiple Regressionβ’10 minutes
- Practice in R: Applying Backwards Eliminationβ’30 minutes
- Feedback: Backwards Eliminationβ’20 minutes
- Practice in R: Run a Model with Different Predictorsβ’30 minutes
- Feedback on the New Modelβ’10 minutes
- Further Reading on Model Selection Methodsβ’20 minutes
- R Code for the Whole Moduleβ’20 minutes
3 assignmentsβ’Total 50 minutes
- Overfitting and Model Selectionβ’20 minutes
- End of Course Quizβ’0 minutes
- Quiz on Rβs Default Output for the Modelβ’30 minutes
1 discussion promptβ’Total 15 minutes
- Share and Reflect: Results from the New Modelβ’15 minutes
1 pluginβ’Total 15 minutes
- Post-course Surveyβ’15 minutes
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Reviewed on Jan 24, 2022
The course needs more exercises to practice R! Good Professors! Clear and Friendly expositions, thanks a lot!
Reviewed on Sep 11, 2019
would have helped if there were even a glance about logistic with multiple outcomes
Reviewed on Sep 9, 2019
Excellent and very complete course on R. Specially for those working in public health and with an interest in understanding models of clinical trials, etc.
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