libcifpp Library to manipulate mmCIF and PDB files

10.0.0 science 👁 on this many watch lists
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7.0.8_3Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org 👁 search for ports maintained by this maintainer

Port Added: 2022-10-04 02:42:09

Last Update: 2026-03-22 05:38:12

Commit Hash: 3df3465

License: BSD2CLAUSE

WWW:

https://github.com/PDB-REDO/libcifpp

Description:

libcifpp is a library the contains code to work with mmCIF and PDB files. It allows to read/write the above mentioned molecule interchange formats.

👁 Homepage
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¦ 👁 GitHub
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¦ 👁 SVNWeb - no subversion history for this port

Manual pages:

FreshPorts has no man page information for this port.

pkg-plist: as obtained via: make generate-plist

Expand this list (44 items)

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1. @ldconfig
2. /usr/local/share/licenses/libcifpp-10.0.0/catalog.mk
3. /usr/local/share/licenses/libcifpp-10.0.0/LICENSE
4. /usr/local/share/licenses/libcifpp-10.0.0/BSD2CLAUSE
5. etc/cron.weekly/update-libcifpp-data
6. etc/libcifpp.conf
7. include/cif++.hpp
8. include/cif++/atom_type.hpp
9. include/cif++/category.hpp
10. include/cif++/compound.hpp
11. include/cif++/condition.hpp
12. include/cif++/cql.hpp
13. include/cif++/datablock.hpp
14. include/cif++/dictionary_parser.hpp
15. include/cif++/exports.hpp
16. include/cif++/file.hpp
17. include/cif++/format.hpp
18. include/cif++/gzio.hpp
19. include/cif++/item.hpp
20. include/cif++/iterator.hpp
21. include/cif++/matrix.hpp
22. include/cif++/model.hpp
23. include/cif++/parser.hpp
24. include/cif++/pdb.hpp
25. include/cif++/point.hpp
26. include/cif++/row.hpp
27. include/cif++/symmetry.hpp
28. include/cif++/text.hpp
29. include/cif++/utilities.hpp
30. include/cif++/validate.hpp
31. lib/cmake/cifpp/cifpp-config-version.cmake
32. lib/cmake/cifpp/cifpp-config.cmake
33. lib/cmake/cifpp/cifpp-targets-release.cmake
34. lib/cmake/cifpp/cifpp-targets.cmake
35. lib/libcifpp.so
36. lib/libcifpp.so.10.0
37. lib/libcifpp.so.10.0.0
38. share/libcifpp/components.cif
39. share/libcifpp/mmcif_ddl.dic
40. share/libcifpp/mmcif_ma.dic
41. share/libcifpp/mmcif_pdbx.dic
42. @owner
43. @group
44. @mode

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USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• libcifpp>0:science/libcifpp

To install the port:

To add the package, run one of these commands:

NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.

PKGNAME: libcifpp

Flavors: there is no flavor information for this port.

distinfo:

TIMESTAMP = 1774152097 SHA256 (libcifpp-10.0.0/components.cif.gz) = dd4396e48d09d57a5840589517259208c9fb777c303902c40d44459685eec97e SIZE (libcifpp-10.0.0/components.cif.gz) = 114892799

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SHA256 (libcifpp-10.0.0/PDB-REDO-libcifpp-v10.0.0_GH0.tar.gz) = f556fcf5fd4a5728c1fd6c67976cdeed72bfd9b80cce6a27356de228c3cd1530 SIZE (libcifpp-10.0.0/PDB-REDO-libcifpp-v10.0.0_GH0.tar.gz) = 2798521

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---

Packages (timestamps in pop-ups are UTC):

libcifpp

ABI	aarch64	amd64	armv6	armv7	i386	powerpc	powerpc64	powerpc64le
FreeBSD:13:latest	7.0.8_3	10.0.0	-	7.0.8_2	10.0.0	n/a	n/a	n/a
FreeBSD:13:quarterly	7.0.8_3	10.0.0	-	7.0.8_2	7.0.8_3	n/a	n/a	n/a
FreeBSD:14:latest	10.0.0	10.0.0	5.0.3.1	7.0.8_2	10.0.0	-	-	-
FreeBSD:14:quarterly	10.0.0	10.0.0	-	7.0.8_2	10.0.0	-	5.1.0.1_1	5.1.0.1_1
FreeBSD:15:latest	10.0.0	10.0.0	n/a	7.0.8_2	n/a	n/a	5.1.0.1_1	5.1.0.1_1
FreeBSD:15:quarterly	10.0.0	10.0.0	n/a	-	n/a	n/a	-	-
FreeBSD:16:latest	10.0.0	10.0.0	n/a	-	n/a	n/a	-	-

Dependencies

NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Build dependencies:

1. catch>0 : devel/catch
2. fast_float>0 : math/fast_float
3. cmake : devel/cmake-core
4. ninja : devel/ninja
5. eigen3.pc : math/eigen3
6. pkgconf>=1.3.0_1 : devel/pkgconf

Runtime dependencies:

1. bash : shells/bash

Library dependencies:

1. libboost_iostreams.so : devel/boost-libs
2. libpcre2-8.so : devel/pcre2
3. libsqlite3.so : databases/sqlite3

This port is required by:

for Libraries

1. science/cif-tools
2. science/dssp

---

Configuration Options:

No options to configure

Options name:

science_libcifpp

USES:

cmake:testing compiler:c++20-lang eigen:3 pkgconfig shebangfix sqlite

FreshPorts was unable to extract/find any pkg message

Master Sites:

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1. https://codeload.github.com/PDB-REDO/libcifpp/tar.gz/v10.0.0?dummy=/

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science/libcifpp: update 7.0.8 → 10.0.0

devel/boost: bump consumers after boost upgrade (+)

Get rid of direct dependency ob libbost_system.so, use libboost_thread.so
instead

devel/boost: bump consumers after Boost update

devel/boost: bump consumers after Boost-1.87 update

Sponsored by:	Future Crew, LLC

science/libcifpp: update 7.0.7 → 7.0.8

devel/boost: bump consu,ers after update Boost to 1.86 release

Sponsored by:	Future Crew, LLC

science/libcifpp: update 7.0.6 → 7.0.7

science/libcifpp: update 7.0.5 → 7.0.6

Reported by:	portscout

*/*: bump consumers after devel/boost* update

With hat:	office
Sponsored by:	Future Crew, LLC

science/libcifpp: Add regression workaround that fixes dependencies

science/libcifpp: update 7.0.4 → 7.0.5

Reported by:	portscout

science/libcifpp: update 5.1.0.1 → 7.0.4

science/libcifpp: Fix fetch broken by update of unversioned file

science/libcifpp: Update 5.0.9 → 5.1.0.1

Reported by:	portscout

science/libcifpp: Update 5.0.3-1 → 5.0.9

Reported by:	portscout

science/libcifpp: Not broken on i386 any more

science/libcifpp: Update 5.0.3 -> 5.0.3-1

science/libcifpp: Broken on i386

Reported by:	fallout

science/libcifpp: Update 4.2.2 -> 5.0.3

science/libcifpp: New port: Library to manipulate mmCIF and PDB files

20 vulnerabilities affecting 360 ports have been reported in the past 14 days

^* - modified, not new

All vulnerabilities

Last processed:
2026-04-11 08:28:37 UTC