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2B9R | pdb_00002b9r
Crystal Structure of Human Cyclin B1
- PDB DOI: https://doi.org/10.2210/pdb2B9R/pdb
- Classification: CELL CYCLE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2005-10-12 Released: 2006-10-17
- Deposition Author(s): Basavappa, R., Petri, E.
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.90 Å
- R-Value Free: 0.308 (Depositor), 0.310 (DCC)
- R-Value Work: 0.243 (Depositor), 0.240 (DCC)
- R-Value Observed: 0.249 (Depositor)
Starting Model: experimental
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The Crystal Structure of Human Cyclin B.
Petri, E.T., Errico, A., Escobedo, L., Hunt, T., Basavappa, R.(2007) Cell Cycle 6: 1342-1349
- PubMed: 17495533 Search on PubMed
- DOI: https://doi.org/10.4161/cc.6.11.4297
- Primary Citation Related Structures:
2B9R - PubMed Abstract:
Cyclin B is the key regulatory protein controlling mitosis in all eukaryotes, where it binds cyclin-dependent kinase, cdk1, forming a complex which initiates the mitotic program through phosphorylation of select proteins. Cyclin B regulates the activation, subcellular localization, and substrate specificity of cdk1, and destruction of cyclin B is necessary for mitotic exit. Overexpression of human cyclin B1 has been found in numerous cancers and has been associated with tumor aggressiveness. Here we report the crystal structure of human cyclin B1 to 2.9 A. Comparison of the structure with cyclin A and cyclin E reveals remarkably similar N-terminal cyclin box motifs but significant differences among the C-terminal cyclin box lobes. Divergence in sequence gives rise to unique interaction surfaces at the proposed cyclin B/cdk1 interface as well as the 'RxL' motif substrate binding site on cyclin B. Examination of the structure provides insight into the molecular basis for differential affinities of protein based cyclin/cdk inhibitors such as p27, substrate recognition, and cdk interaction.
- Department of Biochemistry and Biophysics, University of Rochester School of Medicine and Dentistry, Rochester, New York, USA.
Organizational Affiliation:
Explore in 3D: Structure | Sequence Annotations | Electron Density | Validation Report
Explore in 3D: Structure | Sequence Annotations | Electron Density | Validation Report
Global Symmetry: Asymmetric - C1
Global Stoichiometry: Monomer - A1
Find Similar Assemblies
Biological assembly 1 assigned by authors.
Explore in 3D: Structure | Sequence Annotations | Electron Density | Validation Report
Global Symmetry: Asymmetric - C1
Global Stoichiometry: Monomer - A1
Find Similar Assemblies
Biological assembly 2 assigned by authors.
Macromolecule Content
- Total Structure Weight: 61.68 kDa
- Atom Count: 4,030
- Modeled Residue Count: 509
- Deposited Residue Count: 538
- Unique protein chains: 1
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Human cyclin B1 | 269 | Homo sapiens | Mutation(s): 5 | 👁 Image | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P14635 (Homo sapiens) Explore P14635 Go to UniProtKB: P14635 | |||||
PHAROS: P14635 GTEx: ENSG00000134057 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P14635 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.90 Å
- R-Value Free: 0.308 (Depositor), 0.310 (DCC)
- R-Value Work: 0.243 (Depositor), 0.240 (DCC)
- R-Value Observed: 0.249 (Depositor)
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 117.169 | α = 90 |
| b = 117.169 | β = 90 |
| c = 197.685 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| DENZO | data reduction |
| d*TREK | data scaling |
| PHASER | phasing |
Deposition Data
- Released Date: 2006-10-17 Deposition Author(s): Basavappa, R., Petri, E.
Revision History (Full details and data files)
- Version 1.0: 2006-10-17
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Advisory, Version format compliance - Version 1.3: 2021-10-20
Changes: Database references - Version 1.4: 2023-08-23
Changes: Data collection, Refinement description
