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from $7.50 / 1,000 results
NCBI ClinVar Variant Scraper
Query NCBI ClinVar for human genetic variants tied to disease. Search by gene symbol, variant ID, or clinical significance and pull variation IDs, gene info, molecular consequence, clinical assertions, and review status. Useful for clinical genomics, variant curation, and research.
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🔬 ClinVar Esummary Scraper
🚀 Export NCBI ClinVar data in seconds. Structured records ready for spreadsheet, database, and BI tooling.
🕒 Last updated: 2026-06-05 · 📊 12 fields per record · Public data · Real-time fetch
The ClinVar Esummary Scraper turns the public NCBI ClinVar endpoint into a clean, structured dataset. It calls the upstream API, parses the response, and flattens each record into one row, ready for downstream tooling.
| 🎯 Target Audience | 💡 Primary Use Cases |
|---|---|
| 📊 Analysts and researchers | Build clean datasets from public NCBI ClinVar data. |
| 🏢 Operations teams | Monitor key indicators on a schedule. |
| 🤖 ML engineers | Construct training and evaluation sets. |
| 📰 Journalists | Verify figures and pull sources with one click. |
| 👩💻 Developers | Mirror upstream data into your warehouse without writing client code. |
📋 What the ClinVar Esummary Scraper does
- Calls the public NCBI ClinVar endpoint with the filters you supply.
- Parses the response and normalizes each record.
- Casts numeric fields where possible so the data drops cleanly into BI tools.
- Surfaces upstream errors and rate limits as a single record with the
errorfield set. - Exports to any downstream format supported by Apify.
💡 Why it matters. Public data is great, but raw API responses rarely map cleanly to a spreadsheet. This actor handles the plumbing so you can focus on analysis.
🎬 Full Demo
🚧 Coming soon.
⚙️ Input
| Field | Type | Required | Description |
|---|---|---|---|
maxItems | integer | No | Free users 10. Paid up to 1,000,000. |
searchTerm | string | No | Search term for ClinVar (e.g. BRCA1, pathogenic[clinsig]). |
Example.
⚠️ Good to Know. This actor talks to the public NCBI ClinVar endpoint. Upstream rate limits and availability apply.
📊 Output
Each record is a flat object. error is always last.
| Field | Type | Description |
|---|---|---|
accession | string | Field returned by NCBI ClinVar. |
title | string | Field returned by NCBI ClinVar. |
clinical_significance | string | Field returned by NCBI ClinVar. |
gene | string | Field returned by NCBI ClinVar. |
condition | string | Field returned by NCBI ClinVar. |
review_status | string | Field returned by NCBI ClinVar. |
last_evaluated | string | Field returned by NCBI ClinVar. |
variation_type | string | Field returned by NCBI ClinVar. |
hgvs | string | Field returned by NCBI ClinVar. |
submitters | string | Field returned by NCBI ClinVar. |
scrapedAt | string | Field returned by NCBI ClinVar. |
error | string | Field returned by NCBI ClinVar. |
✨ Why choose this Actor
| 🆓 | Works with the public NCBI ClinVar endpoint. No login required. |
| 🧹 | Clean, normalized field names ready for BI tools. |
| 🔢 | Numeric values parsed where possible. |
| 🛟 | Upstream errors surface as a single error record instead of crashing. |
| 💾 | Push to dataset, exportable to any format Apify supports. |
📈 How it compares to alternatives
| Approach | Setup time | Clean keys | Numeric casting | Error handling |
|---|---|---|---|---|
| Roll your own client | 30 min+ | ❌ | ❌ | ❌ |
| This Actor | 5 sec, no install | ✅ | ✅ | ✅ |
🚀 How to use
- Click Try for free.
- Adjust the filters or leave defaults.
- Click Start. Within seconds, your dataset is ready.
💼 Business use cases
📊 Analytics dashboards. Pipe NCBI ClinVar records into your BI stack for live monitoring.
📈 Trend research. Build historical series for strategy and forecasting.
📰 Newsroom fact checking. Verify a figure for a story without leaving the browser.
🤖 ML feature engineering. Generate clean training inputs from public data.
🔌 Automating ClinVar Esummary Scraper
- Make and Zapier. Trigger this actor on a schedule, route results to Sheets or Slack.
- Cron schedule. Native Apify scheduler, every hour, day, or week.
- Webhooks. POST to your endpoint the moment a run finishes.
- Pipe to BigQuery, Snowflake, Postgres. Native Apify integrations move datasets straight into your warehouse.
🌟 Beyond business use cases
🎓 Education. Use real public data in your statistics or research class.
🧪 Personal research. Build your own datasets for tinkering.
🤝 Non-profit and open data. Publish dashboards without writing client code.
🧰 Prototyping. Spin up a real data feed in 5 seconds to test a new tool.
🤖 Ask an AI assistant about this scraper
Drop this README into ChatGPT, Claude, or any AI assistant and ask it to map your specific workflow to the actor's inputs.
❓ Frequently Asked Questions
❓ Is this real time? Each run hits the upstream endpoint live.
❓ Do I need an API key? No. The actor uses public endpoints.
❓ How are upstream errors handled? A clean record with the error field set is pushed to the dataset.
❓ Can I schedule runs? Yes, use Apify's native scheduler or hook this up to Make or Zapier.
❓ What export formats are supported? Any format Apify's dataset UI offers.
❓ How fresh is the data? As fresh as NCBI ClinVar publishes it.
❓ Can the schema change? Core fields are stable. Upstream additions are passed through where possible.
❓ Are values cast to numbers? Yes where the upstream returns numeric strings.
❓ Does it follow upstream pagination? Where applicable yes, capped by maxItems.
❓ Is this allowed? Only public data is fetched. Comply with the upstream terms of use.
🔌 Integrate with any app
Apify ships native integrations with Make, Zapier, Slack, Discord, Google Drive, Google Sheets, Gmail, Airbyte, Keboola, Telegram, GitHub, and any REST API or webhook endpoint. Trigger runs from a calendar event, a form submission, a cron job, or pipe results straight into BigQuery, Snowflake, or a Postgres warehouse.
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💡 Pro Tip. Browse the complete ParseForge collection for 900+ production-grade scrapers across business intelligence, real estate, e-commerce, sports, finance, and public records.
Disclaimer. This actor scrapes only publicly available data. ParseForge is not affiliated with, endorsed by, or sponsored by any of the third-party services referenced. Users are responsible for complying with the target site's terms of service and applicable law. Create a free account w/ $5 credit.
