| B |
United States of America 40.0%, United Kingdom 15.0%, China 8.0%, Mexico 5.0%, Germany 3.0% |
2019-12-24 |
3999 |
10439 |
One of the two original haplotypes of the pandemic(and first to be discovered) |
| B.1 |
United States of America 47.0%, Turkey 11.0%, United Kingdom 7.0%, Canada 4.0%, France 3.0% |
2020-01-01 |
46223 |
115411 |
A large European lineage the origin of which roughly corresponds to the Northern Italian outbreak early in 2020. |
| B.1.1 |
United Kingdom 25.0%, United States of America 15.0%, Russia 6.0%, Japan 6.0%, Turkey 5.0% |
2020-01-19 |
22778 |
51787 |
European lineage with 3 clear SNPs `28881GA`,`28882GA`,`28883GC` |
| B.1.1.7 |
United Kingdom 23.0%, United States of America 20.0%, Germany 9.0%, Sweden 6.0%, Denmark 6.0% |
2020-01-19 |
69634 |
1118968 |
UK lineage of concern, associated with the N501Y mutation. More information can be found at cov-lineages.org/global_report.html |
| B.1.1.28 |
Brazil 83.0%, Philippines 8.0%, United States of America 3.0%, Paraguay 2.0%, Japan 1.0% |
2020-02-10 |
854 |
5631 |
Brazil mostly, absorbed B.1.1.94 and B.1.1.143 |
| P.1 |
Brazil 58.0%, United States of America 25.0%, Chile 3.0%, Argentina 1.0%, Spain 1.0% |
2020-04-07 |
29942 |
73870 |
Alias of B.1.1.28.1, Brazilian lineage with a number of spike mutations with likely functional significance E484K, K417T, and N501Y. Described in https://virological.org/t/genomic-characterisation-of-an-emergent-sars-cov-2-lineage-in-manaus-preliminary-findings/586, from #77 |
| B.1.1.142 |
United Kingdom 50.0%, Australia 8.0%, Germany 7.0%, United States of America 6.0%, Austria 5.0% |
2020-02-24 |
38 |
249 |
Australian lineage |
| B.1.1.529 |
United States of America 34.0%, Germany 13.0%, India 9.0%, Turkey 5.0%, Russia 5.0% |
2020-04-14 |
0 |
7730 |
South Africa and Botswana lineage, from #343 |
| BA.1 |
United Kingdom 40.0%, United States of America 22.0%, Denmark 6.0%, Germany 4.0%, Brazil 4.0% |
2020-06-25 |
65813 |
426716 |
Alias of B.1.1.529.1, from #361 |
| BA.1.1 |
United States of America 47.0%, United Kingdom 19.0%, Germany 7.0%, Canada 4.0%, France 2.0% |
2020-01-27 |
104388 |
973060 |
Alias of B.1.1.529.1.1, from #360 |
| BA.2 |
United Kingdom 29.0%, Germany 13.0%, Denmark 12.0%, United States of America 11.0%, France 7.0% |
2020-03-28 |
112178 |
1209386 |
Alias of B.1.1.529.2, from #361 |
| BA.2.12.1 |
United States of America 81.0%, Canada 5.0%, United Kingdom 2.0%, Germany 1.0%, Mexico 1.0% |
2020-04-15 |
39743 |
276706 |
Alias of B.1.1.529.2.12.1, USA and Canada lineage, from #499 |
| BM.4.1.1 |
United States of America 24.0%, India 22.0%, United Kingdom 11.0%, Australia 5.0%, Singapore 4.0% |
2022-07-20 |
35 |
928 |
Alias of B.1.1.529.2.75.3.4.1.1, mainly found in India, defined by S:346T |
| DV.7.1 |
Spain 49.0%, United States of America 9.0%, France 7.0%, Canada 5.0%, United Kingdom 5.0% |
2023-05-11 |
45 |
1264 |
Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1, S:L455F (G22927T), S:F456L (T22928C), Spain/Austria, from sars-cov-2-variants/lineage-proposals#135 |
| BN.1.2 |
South_Korea 28.0%, Japan 23.0%, United States of America 7.0%, Thailand 6.0%, Denmark 5.0% |
2022-01-24 |
2344 |
9559 |
Alias of B.1.1.529.2.75.5.1.2, Singapore/England, E:D72G |
| BA.2.86 |
South_Africa 34.0%, United States of America 10.0%, Australia 5.0%, Netherlands 5.0%, Germany 4.0% |
2023-03-11 |
28 |
922 |
Alias of B.1.1.529.2.86, from #2183 |
| BA.2.86.1 |
Japan 20.0%, United Kingdom 11.0%, United States of America 9.0%, Denmark 8.0%, France 6.0% |
2023-01-03 |
22 |
9872 |
Alias of B.1.1.529.2.86.1, ORF1a:K1973R, mostly with C12815T, mainly Europe, from #2236 |
| JN.1 |
United States of America 32.0%, Canada 8.0%, United Kingdom 8.0%, Spain 6.0%, China 4.0% |
2020-01-20 |
3987 |
102966 |
Alias of B.1.1.529.2.86.1.1, S:L455S, ORF1a:R3821K, ORF7b:F19L, Europe |
| JN.1.1 |
United States of America 21.0%, France 17.0%, China 10.0%, Canada 6.0%, United Kingdom 4.0% |
2021-07-16 |
692 |
22674 |
Alias of B.1.1.529.2.86.1.1.1, ORF1a:F499L, C11747T, France, from sars-cov-2-variants/lineage-proposals#987 |
| JN.1.1.1 |
Sweden 29.0%, France 16.0%, United Kingdom 10.0%, United States of America 8.0%, Italy 6.0% |
2023-09-25 |
24 |
588 |
Alias of B.1.1.529.2.86.1.1.1.1, S:T572I on C9142T branch, France/Sweden/Poland, from sars-cov-2-variants/lineage-proposals#1097 |
| JN.1.1.3 |
Japan 23.0%, Sweden 20.0%, United Kingdom 14.0%, France 13.0%, United States of America 8.0% |
2023-11-04 |
68 |
71 |
Alias of B.1.1.529.2.86.1.1.1.3, S:R346T, from sars-cov-2-variants/lineage-proposals#1089 |
| JN.1.1.5 |
Brazil 27.0%, United States of America 26.0%, Japan 8.0%, France 7.0%, South_Africa 4.0% |
2023-01-29 |
43 |
407 |
Alias of B.1.1.529.2.86.1.1.1.5, S:R346T on C9142T branch, from #2492 |
| KR.1 |
United States of America 43.0%, Canada 21.0%, South_Korea 7.0%, Japan 6.0%, Australia 4.0% |
2024-01-06 |
10 |
672 |
Alias of B.1.1.529.2.86.1.1.1.5.1, S:F456L (22928C), after C28498T, from sars-cov-2-variants/lineage-proposals#1253 |
| JN.1.2 |
United States of America 47.0%, Canada 37.0%, Greece 4.0%, United Kingdom 3.0%, Sweden 1.0% |
2023-01-03 |
43 |
2421 |
Alias of B.1.1.529.2.86.1.1.2, S:M1229I, USA/Canada, from sars-cov-2-variants/lineage-proposals#1087 |
| JN.1.3 |
United States of America 29.0%, Netherlands 9.0%, Switzerland 7.0%, Canada 6.0%, United Kingdom 5.0% |
2023-03-04 |
23 |
456 |
Alias of B.1.1.529.2.86.1.1.3, ORF8:Q18*, Netherlands |
| JN.1.4 |
United States of America 44.0%, Canada 8.0%, South_Korea 7.0%, United Kingdom 5.0%, Denmark 4.0% |
2023-02-14 |
129 |
45080 |
Alias of B.1.1.529.2.86.1.1.4, ORF1a:T170I, Denmark/Singapore, from #2381 |
| JN.1.4.2 |
United States of America 84.0%, South_Korea 4.0%, Canada 3.0%, Puerto_Rico 2.0%, United Kingdom 1.0% |
2023-11-17 |
387 |
1246 |
Alias of B.1.1.529.2.86.1.1.4.2, S:N185D, after T18453C, USA, from #2462 |
| JN.1.4.3 |
United States of America 64.0%, Canada 9.0%, United Kingdom 8.0%, China 4.0%, Australia 2.0% |
2023-11-14 |
36 |
400 |
Alias of B.1.1.529.2.86.1.1.4.3, S:T572I, USA, from #2487 |
| KQ.1 |
United States of America 86.0%, Canada 6.0%, United Kingdom 4.0%, Puerto_Rico 1.0%, Poland 1.0% |
2024-01-04 |
64 |
872 |
Alias of B.1.1.529.2.86.1.1.4.3.1, S:R346T, USA from #2487 |
| JN.1.5 |
Singapore 26.0%, China 16.0%, Japan 10.0%, South_Korea 10.0%, United States of America 9.0% |
2023-10-30 |
539 |
2935 |
Alias of B.1.1.529.2.86.1.1.5, ORF1b:V1271T, Singapore/Malaysia/Indonesia, from #2419 |
| JN.1.6 |
United States of America 57.0%, Switzerland 6.0%, France 5.0%, Canada 5.0%, China 5.0% |
2023-10-11 |
141 |
1224 |
Alias of B.1.1.529.2.86.1.1.6, G22627A |
| JN.1.6.1 |
Sweden 47.0%, United States of America 20.0%, United Kingdom 17.0%, Spain 4.0%, Germany 4.0% |
2023-11-26 |
34 |
275 |
Alias of B.1.1.529.2.86.1.1.6.1, S:R346T, Sweden, from sars-cov-2-variants/lineage-proposals#1089 |
| JN.1.7 |
United States of America 47.0%, United Kingdom 14.0%, Canada 10.0%, Spain 4.0%, Ireland 3.0% |
2022-10-18 |
66 |
8276 |
Alias of B.1.1.529.2.86.1.1.7, S:T572I, S:E1150D, USA/France, from sars-cov-2-variants/lineage-proposals#1097 |
| JN.1.7.1 |
United Kingdom 75.0%, United States of America 10.0%, New_Zealand 3.0%, Portugal 3.0%, Ireland 2.0% |
2023-12-31 |
21 |
220 |
Alias of B.1.1.529.2.86.1.1.7.1, S:R346K, England, from sars-cov-2-variants/lineage-proposals#1371 |
| JN.1.7.2 |
United States of America 38.0%, Canada 18.0%, Chile 10.0%, United Kingdom 9.0%, Argentina 5.0% |
2023-12-09 |
110 |
861 |
Alias of B.1.1.529.2.86.1.1.7.2, ORF1b:C1563F, Americas |
| JN.1.8 |
United States of America 37.0%, United Kingdom 15.0%, Spain 7.0%, Canada 7.0%, France 4.0% |
2023-02-26 |
110 |
1965 |
Alias of B.1.1.529.2.86.1.1.8, ORF7a:T28I |
| JN.1.8.1 |
United States of America 72.0%, Canada 16.0%, United Kingdom 2.0%, Japan 1.0%, Spain 1.0% |
2023-02-26 |
96 |
3869 |
Alias of B.1.1.529.2.86.1.1.8.1, S:T572I, after A12928G, USA/Denmark, from sars-cov-2-variants/lineage-proposals#1097 |
| JN.1.9 |
United States of America 43.0%, Spain 10.0%, United Kingdom 9.0%, Canada 8.0%, Puerto_Rico 5.0% |
2023-10-03 |
238 |
3424 |
Alias of B.1.1.529.2.86.1.1.9, S:Q183H, USA/UK/Canada, from #2410 |
| JN.1.9.1 |
United Kingdom 63.0%, Australia 7.0%, New_Zealand 7.0%, Ireland 5.0%, Canada 5.0% |
2023-12-04 |
26 |
350 |
Alias of B.1.1.529.2.86.1.1.9.1, S:T572I, ORF1a:A3143V, from sars-cov-2-variants/lineage-proposals#1097 |
| JN.1.10 |
United States of America 19.0%, Spain 10.0%, Canada 10.0%, Germany 9.0%, United Kingdom 8.0% |
2023-11-07 |
29 |
159 |
Alias of B.1.1.529.2.86.1.1.10, S:T95I, USA/Canada, from sars-cov-2-variants/lineage-proposals#1135 |
| JN.1.11 |
United States of America 30.0%, India 12.0%, Italy 12.0%, Spain 11.0%, Japan 7.0% |
2023-12-07 |
2 |
1114 |
Alias of B.1.1.529.2.86.1.1.11, S:V1104L, G17334T, India, from #2446 |
| JN.1.11.1 |
United States of America 25.0%, Canada 16.0%, Spain 10.0%, United Kingdom 9.0%, Japan 9.0% |
2023-08-11 |
17 |
93253 |
Alias of B.1.1.529.2.86.1.1.11.1, S:F456L (T22928C), after ORF1a:T2283I, India, from sars-cov-2-variants/lineage-proposals#1253 |
| KP.1 |
United States of America 39.0%, Canada 11.0%, Australia 7.0%, New_Zealand 7.0%, United Kingdom 6.0% |
2023-12-30 |
28 |
915 |
Alias of B.1.1.529.2.86.1.1.11.1.1, S:K1086R, from sars-cov-2-variants/lineage-proposals#1364 |
| KP.1.1 |
United States of America 44.0%, Canada 11.0%, Singapore 7.0%, United Kingdom 7.0%, Australia 3.0% |
2024-01-27 |
8 |
11925 |
Alias of B.1.1.529.2.86.1.1.11.1.1.1, S:R346T, from sars-cov-2-variants/lineage-proposals#1089 |
| KP.2 |
United States of America 44.0%, Canada 11.0%, United Kingdom 9.0%, Singapore 7.0%, France 3.0% |
2023-07-05 |
7 |
33354 |
Alias of B.1.1.529.2.86.1.1.11.1.2, S:R346T on JN.1.11.1 polytomy, from sars-cov-2-variants/lineage-proposals#1089 |
| JN.1.12 |
Italy 24.0%, South_Korea 22.0%, United States of America 18.0%, Poland 7.0%, Ireland 7.0% |
2023-11-26 |
11 |
45 |
Alias of B.1.1.529.2.86.1.1.12, S:F456V, ORF7a:A8T, from sars-cov-2-variants/lineage-proposals#1253 |
| JN.1.13 |
United States of America 32.0%, Sweden 15.0%, Canada 9.0%, Russia 8.0%, United Kingdom 7.0% |
2023-12-10 |
21 |
171 |
Alias of B.1.1.529.2.86.1.1.13, S:A1087S, after C26894T, C25680T, USA, from #2464 |
| JN.1.13.1 |
United States of America 38.0%, Canada 14.0%, Russia 12.0%, United Kingdom 7.0%, France 5.0% |
2023-12-07 |
241 |
6189 |
Alias of B.1.1.529.2.86.1.1.13.1, S:R346T, S:F59S, USA, from sars-cov-2-variants/lineage-proposals/issues/1386 |
| JN.1.15 |
United States of America 31.0%, Ecuador 14.0%, Spain 11.0%, United Kingdom 8.0%, Australia 5.0% |
2023-11-09 |
50 |
731 |
Alias of B.1.1.529.2.86.1.1.15, S:A688V |
| JN.1.16 |
United States of America 36.0%, Canada 12.0%, China 7.0%, United Kingdom 6.0%, Spain 6.0% |
2023-07-14 |
47 |
35192 |
Alias of B.1.1.529.2.86.1.1.16, S:F456L (T22928C), from sars-cov-2-variants/lineage-proposals#1253 |
| JN.1.18 |
United States of America 32.0%, United Kingdom 10.0%, Canada 8.0%, France 4.0%, Japan 4.0% |
2023-01-03 |
134 |
6497 |
Alias of B.1.1.529.2.86.1.1.18, S:R346T, directly on JN.1 polytomy, from sars-cov-2-variants/lineage-proposals#1089 |
| JN.1.19 |
United States of America 30.0%, Netherlands 10.0%, United Kingdom 10.0%, Denmark 10.0%, Russia 8.0% |
2023-10-02 |
715 |
1598 |
Alias of B.1.1.529.2.86.1.1.19, ORF8:I71V |
| JN.1.20 |
South_Korea 43.0%, China 13.0%, United States of America 13.0%, Australia 6.0%, Canada 4.0% |
2023-01-02 |
66 |
1179 |
Alias of B.1.1.529.2.86.1.1.20, S:S31F, directly on JN.1 polytomy |
| JN.1.22 |
Canada 32.0%, United States of America 22.0%, United Kingdom 8.0%, Spain 4.0%, Belgium 4.0% |
2023-10-22 |
1541 |
3104 |
Alias of B.1.1.529.2.86.1.1.22, ORF1a:S505F, C13019T, from #2465 |
| JN.1.23 |
Brazil 72.0%, United States of America 16.0%, Canada 3.0%, South_Korea 3.0%, Portugal 2.0% |
2024-01-01 |
48 |
270 |
Alias of B.1.1.529.2.86.1.1.23, S:K444R, S:Y453F, ORF1a:A307V, ORF1a:P2144L, Brazil, from #2488 |
| JN.1.24 |
United States of America 55.0%, United Kingdom 10.0%, Costa_Rica 5.0%, Spain 5.0%, Israel 4.0% |
2023-11-10 |
117 |
189 |
Alias of B.1.1.529.2.86.1.1.24, S:C1243F, USA |
| JN.1.25.1 |
United States of America 31.0%, United Kingdom 31.0%, India 19.0%, Canada 12.0%, Netherlands 6.0% |
2023-12-17 |
16 |
52 |
Alias of B.1.1.529.2.86.1.1.25.1, S:R346T, India |
| JN.2 |
Sweden 34.0%, United Kingdom 16.0%, Canada 12.0%, United States of America 8.0%, Japan 5.0% |
2022-10-22 |
111 |
3986 |
Alias of B.1.1.529.2.86.1.2, ORF1a:Y621C, Europe/North America, from #2284 |
| JN.2.2 |
Netherlands 43.0%, Germany 12.0%, Turkey 10.0%, United Kingdom 6.0%, Sweden 5.0% |
2023-10-27 |
41 |
129 |
Alias of B.1.1.529.2.86.1.2.2, S:T572I, N:G25C, ORF1a:L3644F, Netherlands, from #2433 |
| JN.6 |
United Kingdom 47.0%, United States of America 9.0%, Lithuania 8.0%, Denmark 7.0%, Finland 4.0% |
2023-09-12 |
36 |
721 |
Alias of B.1.1.529.2.86.1.6, S:V193L |
| JN.11 |
Japan 34.0%, Denmark 18.0%, United States of America 13.0%, South_Korea 8.0%, Singapore 6.0% |
2023-04-12 |
78 |
384 |
Alias of B.1.1.529.2.86.1.11, S:V1104L, Asia, from sars-cov-2-variants/lineage-proposals#1303 |
| JQ.2 |
South_Africa 57.0%, Canada 13.0%, United Kingdom 13.0%, United States of America 7.0%, Netherlands 3.0% |
2023-09-28 |
5 |
101 |
Alias of B.1.1.529.2.86.3.2, S:R346T, G2944A, South Africa, from #2505 |
| BA.4.6 |
United States of America 60.0%, Canada 7.0%, United Kingdom 6.0%, France 3.0%, Denmark 3.0% |
2020-02-02 |
1179 |
53217 |
Alias of B.1.1.529.4.6, mainly found in USA, England and Denmark, from #741 |
| BA.5.1 |
United States of America 18.0%, Germany 11.0%, France 10.0%, United Kingdom 10.0%, Denmark 7.0% |
2020-03-14 |
23500 |
229728 |
Alias of B.1.1.529.5.1, Portugal lineage |
| BA.5.1.14 |
Brazil 86.0%, Chile 5.0%, Spain 5.0%, Italy 2.0%, Peru 2.0% |
2022-05-13 |
29 |
44 |
Alias of B.1.1.529.5.1.14, mainly found in Brazil |
| BA.5.1.17 |
France 52.0%, Germany 10.0%, United States of America 5.0%, Denmark 4.0%, Belgium 4.0% |
2021-11-15 |
801 |
1963 |
Alias of B.1.1.529.5.1.17, France lineage |
| BA.5.2 |
Japan 18.0%, United States of America 17.0%, Germany 7.0%, United Kingdom 6.0%, Russia 5.0% |
2020-07-02 |
10665 |
279184 |
Alias of B.1.1.529.5.2, mainly found in South Africa, England and USA, from #551 |
| BF.7.21 |
Germany 21.0%, United States of America 10.0%, Canada 10.0%, Belgium 8.0%, United Kingdom 8.0% |
2022-03-11 |
1973 |
2230 |
Alias of B.1.1.529.5.2.1.7.21, C28603T |
| BF.13 |
United States of America 64.0%, Canada 8.0%, Japan 7.0%, Germany 4.0%, Sweden 3.0% |
2022-06-09 |
36 |
2614 |
Alias of B.1.1.529.5.2.1.13, mainly found in USA, from #883 |
| BF.31.1 |
Chile 64.0%, Canada 12.0%, United States of America 12.0%, Austria 3.0%, Australia 2.0% |
2022-07-27 |
99 |
777 |
Alias of B.1.1.529.5.2.1.31.1, Chile, S:A701V and S:S247N/S:Y248- |
| BQ.1.1.32 |
United States of America 84.0%, United Kingdom 3.0%, Spain 3.0%, Japan 2.0%, Canada 2.0% |
2021-11-30 |
195 |
3159 |
Alias of B.1.1.529.5.3.1.1.1.1.1.1.32 found mainly in USA, S:153I, S:144-, from #1402 |
| DT.3 |
United States of America 98.0%, Germany 1.0%, Sweden 1.0% |
2022-11-26 |
50 |
106 |
Alias of B.1.1.529.5.3.1.1.1.1.1.1.32.3 USA, S:L176F |
| BQ.1.3.2 |
United States of America 76.0%, Canada 5.0%, United Kingdom 3.0%, Japan 2.0%, Germany 2.0% |
2022-08-01 |
2379 |
4353 |
Alias of B.1.1.529.5.3.1.1.1.1.1.3.2, ORF1a:L1853F, USA |
| BQ.1.22 |
United States of America 24.0%, Canada 22.0%, Germany 11.0%, United Kingdom 11.0%, France 7.0% |
2022-09-26 |
12 |
861 |
Alias of B.1.1.529.5.3.1.1.1.1.1.22, Canada, S:R346T after C26681T |
| BA.5.9 |
Germany 39.0%, United States of America 9.0%, United Kingdom 8.0%, Denmark 6.0%, France 4.0% |
2022-01-24 |
217 |
8966 |
Alias of B.1.1.529.5.9, mainly found in Germany, Switzerland and Denmark, from #753 |
