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Py3plex - A multilayer complex network visualization and analysis library in python3
Decision Intelligence platform for Biological Sequence Searching
Parser and database to index the terpene profile of different strains of Cannabis from online databases
A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.
The U-Net Segmentation plugin for Fiji (ImageJ)
An implementation of MNN (Mutual Nearest Neighbors) correct in python.
Accelerate data driven research on embryos with deep learning models 🔬
Phigaro is a scalable command-line tool for predicting phages and prophages
PETAL (ParallEl paThways AnaLyzer): a Python tool for deep biological pathway analysis
GCModeller: genomics CAD(Computer Assistant Design) Modeller system in .NET language
Nucleic and amino acid primitive types
Dashboard for analysis of liquid chromatography (tandem) mass spectrometry data.
TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data
Neural networks for amino acid sequences
Deep Learning Library for Spot Detection
A python library for advanced lattice light-sheet image analysis
RNA secondary structure prediction tool
Self-contained Jupyter notebook that walks through loading raw ECG, designing digital filters, visualising spectra, cleaning noise and extracting heart-rate features—perfect for teaching bio-signal processing.
Collection of statistical scripts, image analysis workflows, data used in publications by the Misteli Lab.
A Pure-Python parser of HMMER3 output
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