Feature map and function annotation of Proteins
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- Python
#
blastp
Here are 22 public repositories matching this topic...
R package to BLAST peptide sequences against each other and identify the minimal overlap of aligning regions.
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- R
Assigns short human readable descriptions to biological sequences or gene families using references. For this, prot-scriber consumes sequence similarity search results in tabular format (Blast or Diamond).
bioinformatics genomics gene-families protein-function-prediction blastx blastp biological-sequence-analysis
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- Rust
Parse consecutive matches in BLAST results.
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- Python
Unraveling Evolutionary Relationship between Fungi Species
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- Shell
This repository contains my implementation, that I built from scratch, of the heuristic blast algorithm used for DNA or protein sequence search against a massive database.
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- Python
PredGenesGetPepts is an easy-to-use, beginner-friendly pipeline to call genes from fasta files, retrieve peptides and blasting them against a given protein database
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- Shell
Modeling chromosomal gene location by protein composition
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- Jupyter Notebook
This project applies bioinformatics techniques to analyze biological sequences, including protein structure prediction, sequence alignment, and comparative genomics using tools like BLASTP, AlphaFold3, and BioPython. It combines algorithmic methods with practical applications in computational genomics.
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- Python
BLAST without Sys.Call()
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- C++
Using BLAST and Transdecoder.
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- Shell
Computational analysis and classification of Variants of Unknown Significance (VUS) in the BCS1L gene associated with Björnstad Syndrome. Implements a conservation score-based algorithm using BLASTp homologous sequences, MUSCLE alignment, and phylogenetic analysis to classify variants as pathogenic or benign.
python bioinformatics computational-biology phylogenetics pathogenicity variant-analysis blastp rare-disease bsc1l bjornstad-syndrome conservation-score vus-classification
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R wrapper for running offline BLASTp alignments on curated protein sequence pairs. Originally built for personal use, now being developed into a reusable package for broader community use.
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- R
This repository hosts the production build of the BrassicaLnc frontend for deployment via GitHub Pages. It delivers the public website for exploring Brassica napus long non-coding RNA data, including expression profiles, lncRNA–miRNA interactions, and TE associations.
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- HTML
Colab notebooks for searching for proteins in biological databases based on sequence similarity using BLAST.
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- Jupyter Notebook
Pipeline to get a protein's residues conservation JSD scores
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- Python
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- Python
Scripts to run benchmarks of BLAST and PLAST on a supercomputer
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- Shell
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