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[IJCAI 2023 survey track]A curated list of resources for chemical pre-trained models
The official codebase of the paper "Chemical language modeling with structured state space sequence models"
Multi-target de novo molecular generator conditioned on AlphaFold's latent protein embeddings.
The official open-source repository for AutoMolDesigner, an easy-to-use Python application dedicated to automated molecular design.
A large language model for predicting membrane permeability of chemically modified peptides particularly for cyclic peptides. This method will help to discover novel orally deliverable peptide
DL Pipeline for Antibiotic Discovery
InertDB, a resource of biologically inactive small molecules
Repository of artifacts for the BERTology manuscript
Code and data of "Lost in Translation: Chemical LMs and the Misunderstanding of Molecule Structures" paper
Genome language model + Molecular language model for antibiotic discovery
The official codebase for the reproducible experiments of the paper "Enhancing deep chemical reaction prediction with advanced chirality and fragment representation"
ModChemBERT: ModernBERT as a Chemical Language Model
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