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URL: https://github.com/topics/circrna-pipeline

⇱ circrna-pipeline · GitHub Topics · GitHub

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circrna-pipeline

Here are 6 public repositories matching this topic...

nf-core / circrna

circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data

workflow bioinformatics rna-seq pipeline genomics nextflow ngs circrna mirna circular-rna circrna-prediction mirna-targets nf-core circrna-pipeline

Updated
Nextflow

OncoHarmony-Network / circrna-pipeline

Cancer circRNA identification pipeline with an ensemble approach

cancer circrna-pipeline

Updated
Shell

eandresleon / miARma-seq

miARma-seq: a comprehensive tool for miRNA, mRNA and circRNA analysis

rna-seq-analysis mirna rnaseq-pipeline circrna-pipeline mirna-seq

Updated
Perl

czheluo / circRNA

Predict circRNA pipeline

circrna rnaseq-pipeline circrna-pipeline

Updated
Perl

CCBR / CCBR_circRNA_AmpliconSeq

Snakemake workflow to process circRNA AmpliconSeq datasets generated to study circRNAs in KSHV and human hosts using divergent primers.

circrna amplicon-sequencing amplicon-pipeline snakemake-workflow circrna-pipeline

Updated
Shell

man4ish / detect_circrna

This pipeline automates the identification and visualization of circular RNAs (circRNAs) from RNA-seq data. It integrates multiple bioinformatics tools to process raw sequencing reads, remove adapters and contaminants, align to a reference genome, and detect circular transcripts from chimeric junctions.

jupyter-notebook circrna-pipeline

Updated
Jupyter Notebook

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