epidemiology
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🦠 Huge collection of useful projects and resources for COVID-19 (2019 novel Coronavirus)
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- TypeScript
Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.
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- Python
COVID-19 Agent-based Simulator (Covasim): a model for exploring coronavirus dynamics and interventions
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Mathematical Modeling of Infectious Disease Dynamics
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An easy-to-use PWA to monitor the user's wellness and learn about COVID-19.
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COVID-19 Hospital Impact Model for Epidemics
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- Python
Unified COVID-19 Dataset
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Tutorial in Python targeted at Epidemiologists. Will discuss the basics of analysis in Python 3
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- Jupyter Notebook
Epidemiology analysis package
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Algorithms from circuit theory to predict connectivity in heterogeneous landscapes
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- Julia
R Package for Analyzing John Snow's 1854 Cholera Map
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Recognize bio-medical entities from a text corpus
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BioDynaMo is a high-performance and modular, agent-based simulation platform.
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CovsirPhy: Python library for COVID-19 analysis with phase-dependent SIR-derived ODE models.
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- Jupyter Notebook
Functions to simplify and standardise antimicrobial resistance (AMR) data analysis and to work with microbial and antimicrobial properties by using evidence-based methods, as described in https://doi.org/10.18637/jss.v104.i03.
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Source files for building the IDM EMOD disease transmission model.
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An agent-based epidemiology simulation framework built in Rust
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- Rust
Public Available Code and Data to Reproduce Analyses in "Air pollution and COVID-19 mortality in the United States: Strengths and limitations of an ecological regression analysis."
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- R
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