Automated omics-scale protein modeling and simulation setup.
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- Python
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modeller
Here are 19 public repositories matching this topic...
An automated pipeline for homology-modeling based on modeller
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- Python
Simple Modeler for Arknights:Endfield to keep track of production lines
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- C#
This is a repository of Modeller automation(Linux version), which will help us to develop exclusive codes for Bioinformatics. We are curious Computer Science people, who are exploring Bioinformatics, This project is also a part of that voyage.
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- Parrot
AlphaMod's official repository for protein folding
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- Python
EasyModel: a user-friendly web-based interface based on MODELLER - https://doi.org/10.1038/s41598-023-44505-9
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- PHP
ProSutra is an automated pipeline for protein structure prediction, validation, and report generation with CLI, Streamlit, and Electron interfaces.
bioinformatics protein-structure computational-biology bioinformatics-pipeline bioinformatics-analysis dssp modeller protein-structure-prediction bioinformatics-tool freesasa computational-biology-datasets protein-validation molprobity robetta qmean voromqa
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- Python
A Python script that compares predicted protein structures (AlphaFold2, MODELLER, RoseTTAFold) against an experimental reference for a single target, reporting quality/fit metrics.
python pdb protein-structure model-evaluation structural-bioinformatics modeller alphafold2 rosettafold
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- Python
Homology Modelling of the human cryptochrome-1 using mouse cryptochrome-1
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- Python
Assess models previously generated with modeller with the DOPE method
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- Python
A Python-based comparative modeling workflow using MODELLER to build homology models from a target FASTA and template PDB, with comparison against a Swiss-Model structure.
pdb protein-structure biopython pymol structural-bioinformatics homology-modeling modeller comparative-modeling
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- Python
A script to generate a tripeptide database. At present, the amino acids of tripeptides produced are not complete
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- Python
Bioinformatics Course - Protein Module Practice
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- Parrot
🧬 Lectures for course ML-protein-design
tensorflow pytorch biopython pymol rdkit modeller pytorch-geometric deepchem alphafold2 py3dmol colabfold rfdesign pyfoldx molgan trdesign rfdiffusion proteinmpnn colabdesign dmasif
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- Jupyter Notebook
基于modeller官网脚本进行开发的序列比对脚本
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- Python
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