Genomic Data Retrieval with R
r genomics genome metagenomics rstats genome-annotation r-package meta-analysis genome-retrieval biomart database-retrieval ncbi-genbank ensembl-servers sequenced-genomes proteome peer-reviewed
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- R
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ncbi-genbank
Here are 11 public repositories matching this topic...
Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
bioinformatics-pipeline genbank ncbi-submission ncbi-genbank cdc sra ncbi-sra ncbi-biosamples gisaid gisaid-uploader biosample gisaid-format gisaid-upload seqsender ncird ncird-id cdc-influenza-division
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- Python
This program can be used to parse the NCBI GenBank file to create a tabulated csv file.
python metadata parser extract-information biopython ncbi-genbank extract-data file-parser reference-data
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- Python
A tool to prepare files and run/monitor programmatic submissions to NCBI
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- Python
Download genomes from NCBI GenBank FTP site
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- Python
This pipeline will check assembly and annotations based on gene families.
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- Python
Computer program developed to investigate one of the viruses that has greatly affected the country, determine and establish phylogenetic relationships, determining patterns and trends, as well as make use of programming tools to establish data analysis.
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- HTML
Python and R Scripts for Statistical analysis of available immunogobulin variable genes
python human python3 sequence ncbi-genbank dna-sequences immunoglobulin ncbi-database ncbi-blast primates dna-assembly primatedata
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- Python
Dataset generation pipeline for Enigma2 using NCBI database
biopython ncbi-genbank ncbi data-pipeline ncbi-database alphafold2 dna-database dna-database-pipline
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- Python
I developed the "National Centre for Biotechnology Information" project to create a comprehensive and user-friendly platform for accessing and exploring a wealth of biotechnological information. Utilizing HTML, CSS, and Bootstrap, I designed a responsive web application that ensures seamless accessibility across various devices and screen sizes.
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- HTML
Data cleaning and analysis of LASLO results
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- R
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