neuron
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Brain Modeling Toolkit
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Simulator optimized for large scale neural network simulations.
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pyABF is a Python package for reading electrophysiology data from Axon Binary Format (ABF) files
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- Jupyter Notebook
NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.
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Probabilistic question-asking system: the program asks, the users answer. The minimal goal of the program is to identify what the user needs (a target), even if the user is not aware of the existence of such a thing/product/service.
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Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Install & use in 5 mins.
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A curated list of awesome cns frameworks, libraries, and software + First class pure python Tutorial Series for Spiking Neural Networks 🔥
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The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration
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Short undergraduate course taught at University of Pennsylvania on computational and theoretical neuroscience. Provides an introduction to programming in MATLAB, single-neuron models, ion channel models, basic neural networks, and neural decoding.
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A MATLAB neuron simulator. Very fast (written in C++). Flexible (fully object oriented). Immediate (live manipulation in MATLAB). Comes with a powerful parameter optimizer. Get started ➡️
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A virtual optogenetics laboratory
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Reconstruction of watertight meshes, annotated volumes and center line skeletons of neuroscience spatial structures from non-watertight inputs, segmented masks, skeletons of NGV morphologies and volumes.
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This is a repository with implementations of neuron models, synapses, and spiking neural networks (SNN). It's still in development and it has original content in terms of code.
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A python and C++ library for reading and writing neuronal morphologies
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Offical Implementation of "CLIF: Complementary Leaky Integrate-and-Fire Neuron for Spiking Neural Networks" (ICML 2024 spotlight)
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- Python
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