qiime2-environment
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QIIME2 Microbiome Analysis Workflow
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- Shell
This workflow performs a metabarcoding analysis from the reads sequencing to the production of a report presenting the graphical results.
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- Python
This repository is a place for codes I have used during my PhD for microbiome analysis of spider egg sacs. Two species were analysed: Parasteatoda tepidariorum and Pardosa lugubris. Three egg sac's conditions: environment + silk + eggs. This code was created in this 'simple adaptation' vibes, so I can tweak it here and there for the future studies.
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- R
This was created and refined during my PhD as the part of the scientific project. Codes are highly customizable. Watch out - Each code does a heatmap for absolutely different thing.
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- R
This script I have created for my last PhD-related paper, as I needed to better understand the microbiome of cocoon's environment, cocoon's silk and cocoon's eggs. It also introduces more refined metagenomic data filtering.
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- R
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