py3Dmol 2.5.5

Meta

• License: MIT License (MIT)
• Author: David Koes
• Tags molecule , protein , visualization
• Provides-Extra: ipython

Classifiers

• Development Status
  • 5 - Production/Stable
• Intended Audience
  • Developers
  • Science/Research
• License
  • OSI Approved :: MIT License
• Programming Language
  • Python :: 2
  • Python :: 3
• Topic
  • Scientific/Engineering :: Bio-Informatics
  • Scientific/Engineering :: Chemistry
  • Scientific/Engineering :: Visualization

A simple [IPython/Jupyter](http://jupyter.org/) widget to embed an interactive [3Dmol.js](http://3dmol.org) viewer in a notebook.

The widget is completely static, which means the viewer doesn’t need a running IPython kernel to be useful and web pages and presentations generated from the notebook will work as expected. However, this also means there is only one-way communication between the notebook and the viewer.

If you experience problems, please file an [issue](https://github.com/3dmol/3Dmol.js/issues).

[An example notebook](http://nbviewer.jupyter.org/github/3dmol/3Dmol.js/blob/master/py3Dmol/examples.ipynb)

Installation

From PyPI:

pip install py3Dmol

Usage

Open a notebook

jupyter notebook

and issue

`Python import py3Dmol view = py3Dmol.view(query='pdb:1ubq') view.setStyle({'cartoon':{'color':'spectrum'}}) view `

API

The returned view object has the exact same API as [$3Dmol.GLViewer](https://3dmol.org/doc/GLViewer.html) with the exception that functions return None.

License

MIT

Verified details

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Maintainers

👁 Avatar for dkoes from gravatar.com
dkoes

Unverified details

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Project links

• Homepage

• Download URL: py3dmol-2.5.5.tar.gz
• Upload date: May 23, 2026
• Size: 7.8 kB
• Tags: Source
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• Uploaded via: twine/6.1.0 CPython/3.12.3

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• Upload date: May 23, 2026
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• Tags: Python 2, Python 3
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