Analyze Bitbucket Data in R via JDBC

Access Bitbucket data with pure R script and standard SQL on any machine where R and Java can be installed. You can use the CData JDBC Driver for Bitbucket and the RJDBC package to work with remote Bitbucket data in R. By using the CData Driver, you are leveraging a driver written for industry-proven standards to access your data in the popular, open-source R language. This article shows how to use the driver to execute SQL queries to Bitbucket and visualize Bitbucket data by calling standard R functions.

Install R

You can match the driver's performance gains from multi-threading and managed code by running the multithreaded Microsoft R Open or by running open R linked with the BLAS/LAPACK libraries. This article uses Microsoft R Open 3.2.3, which is preconfigured to install packages from the Jan. 1, 2016 snapshot of the CRAN repository. This snapshot ensures reproducibility.

Load the RJDBC Package

To use the driver, download the RJDBC package. After installing the RJDBC package, the following line loads the package:

library(RJDBC)

Connect to Bitbucket as a JDBC Data Source

You will need the following information to connect to Bitbucket as a JDBC data source:

• Driver Class: Set this to cdata.jdbc.bitbucket.BitbucketDriver
• Classpath: Set this to the location of the driver JAR. By default this is the lib subfolder of the installation folder.

The DBI functions, such as dbConnect and dbSendQuery, provide a unified interface for writing data access code in R. Use the following line to initialize a DBI driver that can make JDBC requests to the CData JDBC Driver for Bitbucket:

driver <- JDBC(driverClass = "cdata.jdbc.bitbucket.BitbucketDriver", classPath = "MyInstallationDir\lib\cdata.jdbc.bitbucket.jar", identifier.quote = "'") 

You can now use DBI functions to connect to Bitbucket and execute SQL queries. Initialize the JDBC connection with the dbConnect function.

For most queries, you must set the Workspace. The only exception to this is the Workspaces table, which does not require this property to be set, as querying it provides a list of workspace slugs that can be used to set Workspace. To query this table, you must set Schema to 'Information' and execute the query SELECT * FROM Workspaces>.

Setting Schema to 'Information' displays general information. To connect to Bitbucket, set these parameters:

• Schema: To show general information about a workspace, such as its users, repositories, and projects, set this to Information. Otherwise, set this to the schema of the repository or project you are querying. To get a full set of available schemas, query the sys_schemas table.
• Workspace: Required if you are not querying the Workspaces table. This property is not required for querying the Workspaces table, as that query only returns a list of workspace slugs that can be used to set Workspace.

Authenticating to Bitbucket

Bitbucket supports OAuth authentication only. To enable this authentication from all OAuth flows, you must create a custom OAuth application, and set AuthScheme to OAuth.

Be sure to review the Help documentation for the required connection properties for you specific authentication needs (desktop applications, web applications, and headless machines).

Creating a custom OAuth application

From your Bitbucket account:

1. Go to Settings (the gear icon) and select Workspace Settings.
2. In the Apps and Features section, select OAuth Consumers.
3. Click Add Consumer.
4. Enter a name and description for your custom application.
5. Set the callback URL:
   • For desktop applications and headless machines, use http://localhost:33333 or another port number of your choice. The URI you set here becomes the CallbackURL property.
   • For web applications, set the callback URL to a trusted redirect URL. This URL is the web location the user returns to with the token that verifies that your application has been granted access.
6. If you plan to use client credentials to authenticate, you must select This is a private consumer. In the driver, you must set AuthScheme to client.
7. Select which permissions to give your OAuth application. These determine what data you can read and write with it.
8. To save the new custom application, click Save.
9. After the application has been saved, you can select it to view its settings. The application's Key and Secret are displayed. Record these for future use. You will use the Key to set the OAuthClientId and the Secret to set the OAuthClientSecret.

Built-in Connection String Designer

For assistance in constructing the JDBC URL, use the connection string designer built into the Bitbucket JDBC Driver. Either double-click the JAR file or execute the jar file from the command-line.

java -jar cdata.jdbc.bitbucket.jar

Fill in the connection properties and copy the connection string to the clipboard.

👁 Using the built-in connection string designer to generate a JDBC URL (Salesforce is shown.)

Below is a sample dbConnect call, including a typical JDBC connection string:

conn <- dbConnect(driver,"jdbc:bitbucket:Workspace=myworkspaceslug;Schema=Information;InitiateOAuth=GETANDREFRESH;")

Schema Discovery

The driver models Bitbucket APIs as relational tables, views, and stored procedures. Use the following line to retrieve the list of tables:

dbListTables(conn)

Execute SQL Queries

You can use the dbGetQuery function to execute any SQL query supported by the Bitbucket API:

issues <- dbGetQuery(conn,"SELECT Title, ContentRaw FROM Issues WHERE Id = '1'")

You can view the results in a data viewer window with the following command:

View(issues)

Plot Bitbucket Data

You can now analyze Bitbucket data with any of the data visualization packages available in the CRAN repository. You can create simple bar plots with the built-in bar plot function:

par(las=2,ps=10,mar=c(5,15,4,2))
barplot(issues$ContentRaw, main="Bitbucket Issues", names.arg = issues$Title, horiz=TRUE)

👁 A basic bar plot. (Salesforce is shown.)