1L5G | pdb_00001l5g

CRYSTAL STRUCTURE OF THE EXTRACELLULAR SEGMENT OF INTEGRIN AVB3 IN COMPLEX WITH AN ARG-GLY-ASP LIGAND

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d1l5gb1	All beta proteins	Immunoglobulin-like beta-sandwich	Integrin domains	Integrin domains	Hybrid domain of integrin beta	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d1l5gb2	Alpha and beta proteins (a/b)	vWA-like	vWA-like	Integrin A (or I) domain	Integrin beta A domain	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d1l5gb3	Alpha and beta proteins (a+b)	Integrin beta tail domain	Integrin beta tail domain	Integrin beta tail domain	Integrin beta tail domain	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d1l5gb4	Small proteins	Knottins (small inhibitors, toxins, lectins)	EGF/Laminin	Integrin beta EGF-like domains	Integrin beta EGF-like domains	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d1l5ga1	All beta proteins	Immunoglobulin-like beta-sandwich	Integrin domains	Integrin domains	Thigh, calf-1 and calf-2 domains of integrin alpha	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d1l5ga4	All beta proteins	7-bladed beta-propeller	Integrin alpha N-terminal domain	Integrin alpha N-terminal domain	Integrin alpha N-terminal domain	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Integrin domains	8055552	3002062	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	vWA-like	8055554	3000832	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	EGF/Laminin-like	8041568	3000412	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Integrin beta tail domain	8041567	3000823	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	EGF/Laminin-like	8041569	3000412	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Integrin domains	8055552	3002062	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Integrin domains	8055491	3002062	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Integrin alpha N-terminal domain	8041564	3000314	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Integrin domains	8055305	3002062	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Integrin domains	8055489	3002062	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Copper-bind	e1l5gB1	A: beta barrels	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: Copper-bind	ECOD (v294.2)
B	RF-1	e1l5gB2	A: beta barrels	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: RF-1	ECOD (v294.2)
B	Sushi	e1l5gB3	A: beta barrels	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: Sushi	ECOD (v294.2)
B	SNO	e1l5gB5	A: beta barrels	X: HTH	H: HTH	T: winged helix domain	F: SNO	ECOD (v294.2)
A	Copper-bind	e1l5gA1	A: beta barrels	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: Copper-bind	ECOD (v294.2)
A	Lactonase, YNCE, choice_anch_I	e1l5gA4	A: beta barrels	X: Phage tail fiber protein trimerization domain	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: Lactonase, YNCE, choice_anch_I	ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.60.40.1510	Mainly Beta	Sandwich	Immunoglobulin-like	ntegrin, alpha v. Chain A, domain 3	CATH (4.3.0)
B	3.40.50.410	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	von Willebrand factor, type A domain	CATH (4.3.0)
B	2.10.25.10	Mainly Beta	Ribbon	Laminin	Laminin	CATH (4.3.0)
B	4.10.1240.30	Few Secondary Structures	Irregular	Hormone receptor fold	CATH (4.3.0)
A	2.130.10.130	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (4.3.0)
A	2.60.40.1460	Mainly Beta	Sandwich	Immunoglobulin-like	Integrin domains. Chain A, domain 2	CATH (4.3.0)
A	2.60.40.1510	Mainly Beta	Sandwich	Immunoglobulin-like	ntegrin, alpha v. Chain A, domain 3	CATH (4.3.0)
A	2.60.40.1530	Mainly Beta	Sandwich	Immunoglobulin-like	ntegrin, alpha v. Chain A, domain 4	CATH (4.3.0)

IMGT Antibody Annotation IMGT Database Homepage

Chain	Protein Name	Description	Organism Name	Gene Allele Name(s)	Domain Name(s)	Receptor Type	Receptor Description	Provenance Source
B	INTEGRIN-ALPHA-V_BETA-3	INTEGRIN-BETA-3	Homo sapiens (human)	BETA-3	P-LIKE-DOMAIN PSI, Y-LIKE-DOMAIN Hybrid-1, B-LIKE-DOMAIN BETA-1, Y-LIKE-DOMAIN Hybrid-2, E-LIKE-DOMAIN EGF-1, E-LIKE-DOMAIN EGF-2, E-LIKE-DOMAIN EGF-3, E-LIKE-DOMAIN EGF-4, T-LIKE-DOMAIN B-Tail	RPI	INTEGRIN-ALPHA-V_BETA-3	IMGT (202622-0)
A	INTEGRIN-ALPHA-V_BETA-3	INTEGRIN-ALPHA-V	Homo sapiens (human)	ALPHA-V	A-LIKE-DOMAIN B-Propeller, F1-LIKE-DOMAIN Thigh, F1-LIKE-DOMAIN Calf-1, F2-LIKE-DOMAIN Calf-2	RPI	INTEGRIN-ALPHA-V_BETA-3	IMGT (202622-0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B	PF00362	Integrin beta chain VWA domain (Integrin_beta)	Integrin beta chain VWA domain	Integrins have been found in animals and their homologues have also been found in cyanobacteria, probably due to horizontal gene transfer [1]. This domain corresponds to the integrin beta VWA domain.	Domain
B	PF07974	EGF-like domain (EGF_2)	EGF-like domain	This family contains EGF domains found in a variety of extracellular proteins.	Domain
B	PF07965	Integrin beta tail domain (Integrin_B_tail)	Integrin beta tail domain	This is the beta tail domain of the Integrin protein. Integrins are receptors which are involved in cell-cell and cell-extracellular matrix interactions.	Domain
A	PF20805	Integrin alpha Ig-like domain 2 (Integrin_A_Ig_2)	Integrin alpha Ig-like domain 2	This domain is found in integrin alpha and integrin alpha precursors to the C terminus of a number of Pfam:PF01839 repeats and to the N-terminus of the Pfam:PF00357 cytoplasmic region. This region is composed of an immunoglobulin-like domain.	Domain
A	PF01839	FG-GAP repeat (FG-GAP)	FG-GAP repeat	-	Repeat
A	PF08441	Integrin alpha Ig-like domain 1 (Integrin_A_Ig_1)	Integrin alpha Ig-like domain 1	This domain is found in integrin alpha and integrin alpha precursors to the C terminus of a number of Pfam:PF01839 repeats and to the N-terminus of the Pfam:PF00357 cytoplasmic region. This region is composed of an immunoglobulin-like domain.	Domain
A	PF20806	Integrin alpha Ig-like domain 3 (Integrin_A_Ig_3)	Integrin alpha Ig-like domain 3	This domain is found in integrin alpha and integrin alpha precursors to the C terminus of a number of Pfam:PF01839 repeats and to the N-terminus of the Pfam:PF00357 cytoplasmic region. This region is composed of an immunoglobulin-like domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C	CYCLIC ARG-GLY-ASP PEPTIDE	-	-	-
B	INTEGRIN BETA-3	protein binding binding signaling receptor binding platelet-derived growth factor receptor binding growth factor receptor binding protein-containing complex binding fibrinogen binding cation binding ion binding metal ion binding small molecule binding cell adhesion molecule binding enzyme binding protease binding protein binding binding signaling receptor binding platelet-derived growth factor receptor binding growth factor receptor binding protein-containing complex binding fibrinogen binding cation binding ion binding metal ion binding small molecule binding cell adhesion molecule binding enzyme binding protease binding cytokine receptor binding vascular endothelial growth factor receptor binding vascular endothelial growth factor receptor 2 binding molecular transducer activity coreceptor activity signaling receptor activity isomerase activity intramolecular oxidoreductase activity catalytic activity, acting on a protein intramolecular oxidoreductase activity, transposing S-S bonds catalytic activity protein disulfide isomerase activity fibronectin binding identical protein binding virus receptor activity exogenous protein binding extracellular matrix binding integrin binding kinase binding protein kinase C binding protein kinase binding	cellular response to stimulus cellular response to nitrogen compound response to stimulus response to endogenous stimulus response to peptide hormone cellular response to peptide hormone stimulus response to oxygen-containing compound response to nitrogen compound cellular response to oxygen-containing compound cellular response to endogenous stimulus cellular response to chemical stimulus response to hormone response to chemical cellular process cellular response to stimulus cellular response to nitrogen compound response to stimulus response to endogenous stimulus response to peptide hormone cellular response to peptide hormone stimulus response to oxygen-containing compound response to nitrogen compound cellular response to oxygen-containing compound cellular response to endogenous stimulus cellular response to chemical stimulus response to hormone response to chemical cellular process cellular response to insulin-like growth factor stimulus cellular response to hormone stimulus biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction regulation of localization regulation of biological process negative regulation of lipid transport transport regulation of transport biological regulation negative regulation of biological process lipid localization lipid transport negative regulation of transport regulation of lipid transport establishment of localization negative regulation of lipid localization localization regulation of lipid localization macromolecule localization cell adhesion substrate adhesion-dependent cell spreading cell-substrate adhesion positive regulation of cell communication regulation of cellular process cellular response to growth factor stimulus positive regulation of signal transduction signaling positive regulation of biological process regulation of signal transduction cell surface receptor protein tyrosine kinase signaling pathway cell communication positive regulation of response to stimulus signal transduction regulation of vascular endothelial growth factor signaling pathway enzyme-linked receptor protein signaling pathway positive regulation of cellular process regulation of signaling regulation of cellular response to vascular endothelial growth factor stimulus cell surface receptor signaling pathway regulation of cellular response to growth factor stimulus positive regulation of vascular endothelial growth factor signaling pathway vascular endothelial growth factor signaling pathway regulation of response to stimulus regulation of cell communication cellular response to vascular endothelial growth factor stimulus response to growth factor positive regulation of signaling response to platelet-derived growth factor positive regulation of locomotion regulation of cell motility positive regulation of smooth muscle cell migration regulation of smooth muscle cell migration positive regulation of cell migration smooth muscle cell migration muscle cell migration regulation of locomotion positive regulation of cell motility regulation of cell migration cell migration cell motility locomotion multicellular organismal process regulation of body fluid levels wound healing cell activation hemostasis blood coagulation response to stress coagulation regulation of biological quality response to wounding platelet activation cell population proliferation positive regulation of cell population proliferation positive regulation of osteoblast proliferation osteoblast proliferation regulation of cell population proliferation regulation of osteoblast proliferation developmental process epithelium development morphogenesis of an epithelium epiboly involved in wound healing tissue development morphogenesis of an epithelial sheet wound healing, spreading of epidermal cells tissue morphogenesis anatomical structure morphogenesis anatomical structure development epiboly wound healing, spreading of cells chemotaxis negative chemotaxis taxis response to external stimulus regulation of smooth muscle cell proliferation smooth muscle cell proliferation positive regulation of smooth muscle cell proliferation muscle cell proliferation cellular localization regulation of postsynaptic neurotransmitter receptor diffusion trapping localization within membrane neurotransmitter receptor diffusion trapping regulation of postsynaptic membrane neurotransmitter receptor levels regulation of cellular localization receptor diffusion trapping receptor localization to synapse postsynaptic neurotransmitter receptor diffusion trapping regulation of receptor localization to synapse cellular response to xenobiotic stimulus response to xenobiotic stimulus negative regulation of lipoprotein metabolic process regulation of protein metabolic process lipoprotein metabolic process negative regulation of metabolic process primary metabolic process regulation of macromolecule metabolic process regulation of primary metabolic process negative regulation of cellular process regulation of lipoprotein metabolic process metabolic process protein metabolic process macromolecule metabolic process regulation of metabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process import into cell phagocytosis apoptotic cell clearance endocytosis vesicle-mediated transport multicellular organism development tube development intracellular signal transduction positive regulation of ERK1 and ERK2 cascade regulation of intracellular signal transduction intracellular signaling cassette positive regulation of MAPK cascade positive regulation of intracellular signal transduction regulation of MAPK cascade MAPK cascade ERK1 and ERK2 cascade regulation of ERK1 and ERK2 cascade nitrogen compound transport regulation of neurotransmitter transport serotonin uptake regulation of serotonin uptake organic hydroxy compound transport neurotransmitter transport establishment of localization in cell neurotransmitter uptake neurotransmitter reuptake regulation of neurotransmitter uptake regulation of cytoskeleton organization regulation of cellular component organization regulation of actin filament-based process actin cytoskeleton organization regulation of organelle organization cellular component organization organelle organization regulation of actin cytoskeleton organization actin filament-based process cellular component organization or biogenesis cytoskeleton organization response to activity cell adhesion mediated by integrin multi-multicellular organism process reproductive process female pregnancy embryo implantation multi-organism reproductive process response to mechanical stimulus response to abiotic stimulus cellular response to mechanical stimulus cellular response to abiotic stimulus cellular response to external stimulus cellular response to environmental stimulus regulation of protein localization intracellular protein localization formation of primary germ layer mesodermal cell differentiation cellular developmental process mesoderm morphogenesis embryonic morphogenesis embryo development gastrulation cell differentiation anatomical structure formation involved in morphogenesis mesoderm formation mesoderm development negative regulation of endothelial cell apoptotic process negative regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death cell death negative regulation of apoptotic process endothelial cell apoptotic process apoptotic process programmed cell death regulation of endothelial cell apoptotic process endothelial cell proliferation positive regulation of epithelial cell proliferation regulation of endothelial cell proliferation positive regulation of endothelial cell proliferation regulation of epithelial cell proliferation epithelial cell proliferation maintenance of synapse structure postsynapse organization cellular component maintenance cell junction maintenance cell junction organization maintenance of postsynaptic specialization structure postsynaptic density organization synapse organization postsynaptic specialization organization regulation of biosynthetic process gene expression macromolecule biosynthetic process positive regulation of macromolecule biosynthetic process regulation of gene expression positive regulation of metabolic process biosynthetic process positive regulation of gene expression positive regulation of biosynthetic process regulation of macromolecule biosynthetic process positive regulation of macromolecule metabolic process regulation of vascular endothelial growth factor receptor signaling pathway vascular endothelial growth factor receptor signaling pathway positive regulation of vascular endothelial growth factor receptor signaling pathway homotypic cell-cell adhesion platelet aggregation cell-cell adhesion homeostatic process regulation of bone remodeling tissue homeostasis regulation of tissue remodeling regulation of bone resorption bone resorption multicellular organismal-level homeostasis tissue remodeling bone remodeling anatomical structure homeostasis regulation of multicellular organismal process lipid storage regulation of lipid storage negative regulation of lipid storage nutrient storage regulation of plasma lipoprotein particle levels regulation of low-density lipoprotein particle clearance negative regulation of low-density lipoprotein particle clearance plasma lipoprotein particle clearance negative regulation of lipoprotein particle clearance regulation of lipoprotein particle clearance low-density lipoprotein particle clearance negative regulation of multicellular organismal process regulation of lymphocyte migration positive regulation of mononuclear cell migration regulation of immune system process regulation of mononuclear cell migration positive regulation of immune system process positive regulation of lymphocyte migration regulation of leukocyte migration positive regulation of T cell migration lymphocyte migration positive regulation of leukocyte migration leukocyte migration immune system process regulation of T cell migration mononuclear cell migration T cell migration positive regulation of multicellular organismal process positive regulation of bone resorption heterotypic cell-cell adhesion regulation of calcium ion transport monoatomic ion transmembrane transport regulation of monoatomic ion transmembrane transport calcium ion transport metal ion transport regulation of calcium ion transmembrane transport monoatomic cation transmembrane transport intercellular transport monoatomic ion transport monoatomic cation transport regulation of metal ion transport calcium ion transmembrane import into cytosol regulation of release of sequestered calcium ion into cytosol regulation of monoatomic ion transport transmembrane transport release of sequestered calcium ion into cytosol regulation of transmembrane transport regulation of monoatomic cation transmembrane transport calcium ion transmembrane transport blood vessel morphogenesis angiogenesis involved in wound healing angiogenesis vasculature development circulatory system development tube morphogenesis blood vessel development system development receptor internalization postsynaptic neurotransmitter receptor internalization regulation of receptor internalization vesicle-mediated transport in synapse regulation of postsynaptic neurotransmitter receptor internalization regulation of endocytosis regulation of receptor-mediated endocytosis regulation of vesicle-mediated transport neurotransmitter receptor internalization postsynaptic endocytosis receptor-mediated endocytosis cell-cell adhesion mediated by integrin cell-matrix adhesion regulation of developmental process negative regulation of developmental process macrophage derived foam cell differentiation regulation of cell differentiation negative regulation of macrophage derived foam cell differentiation foam cell differentiation regulation of macrophage derived foam cell differentiation negative regulation of cell differentiation endothelial cell migration positive regulation of endothelial cell migration regulation of endothelial cell migration apolipoprotein A-I-mediated signaling pathway connective tissue development renal system development kidney vasculature development renal system vasculature development positive regulation of glomerular mesangial cell proliferation regulation of glomerular mesangial cell proliferation nephron development positive regulation of cell proliferation involved in kidney development animal organ development cell proliferation involved in kidney development glomerular mesangium development glomerulus development glomerular mesangial cell proliferation glomerulus vasculature development kidney development regulation of fibroblast migration positive regulation of fibroblast migration fibroblast migration ameboidal-type cell migration integrin-mediated signaling pathway positive regulation of cell adhesion mediated by integrin positive regulation of cell adhesion regulation of cell adhesion mediated by integrin regulation of cell adhesion regulation of vasculature development positive regulation of developmental process regulation of anatomical structure morphogenesis regulation of multicellular organismal development positive regulation of angiogenesis positive regulation of vasculature development regulation of angiogenesis regulation of opioid receptor signaling pathway positive regulation of opioid receptor signaling pathway G protein-coupled opioid receptor signaling pathway regulation of G protein-coupled receptor signaling pathway positive regulation of adenylate cyclase-inhibiting opioid receptor signaling pathway positive regulation of G protein-coupled receptor signaling pathway adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway regulation of adenylate cyclase-inhibiting opioid receptor signaling pathway adenylate cyclase-inhibiting opioid receptor signaling pathway adenylate cyclase-modulating G protein-coupled receptor signaling pathway G protein-coupled receptor signaling pathway	protein-containing complex plasma membrane protein complex membrane plasma membrane membrane protein complex cell periphery cellular anatomical structure integrin complex plasma membrane signaling receptor complex signaling receptor complex protein complex involved in cell adhesion integrin alphaIIb-beta3 complex cell-cell junction anchoring junction protein-containing complex plasma membrane protein complex membrane plasma membrane membrane protein complex cell periphery cellular anatomical structure integrin complex plasma membrane signaling receptor complex signaling receptor complex protein complex involved in cell adhesion integrin alphaIIb-beta3 complex cell-cell junction anchoring junction cell junction alphav-beta3 integrin-HMGB1 complex focal adhesion cell-substrate junction apical part of cell plasma membrane region apical plasma membrane ruffle cell leading edge leading edge membrane plasma membrane bounded cell projection cell projection ruffle membrane cell projection membrane cell surface lamellipodium membrane lamellipodium membrane-bounded organelle intracellular anatomical structure platelet alpha granule membrane intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle membrane bounding membrane of organelle vesicle membrane cytoplasmic vesicle organelle secretory granule secretory vesicle cytoplasm vesicle organelle membrane platelet alpha granule secretory granule membrane postsynapse postsynaptic membrane synapse synaptic membrane alphav-beta3 integrin-PKCalpha complex external side of plasma membrane side of membrane extracellular exosome extracellular vesicle extracellular organelle extracellular region extracellular membrane-bounded organelle intracellular membraneless organelle actin cytoskeleton actin-based cell projection cytoskeleton membraneless organelle microvillus microvillus membrane glutamatergic synapse alphav-beta3 integrin-IGF-1-IGF1R complex integrin alphav-beta3 complex pigment granule melanosome alphav-beta3 integrin-vitronectin complex glycinergic synapse alpha9-beta1 integrin-ADAM8 complex filopodium membrane filopodium nucleus
A	INTEGRIN ALPHA V	molecular transducer activity coreceptor activity signaling receptor activity protein binding binding extracellular matrix protein binding fibronectin binding opsonin binding cation binding ion binding metal ion binding small molecule binding virus receptor activity exogenous protein binding molecular transducer activity coreceptor activity signaling receptor activity protein binding binding extracellular matrix protein binding fibronectin binding opsonin binding cation binding ion binding metal ion binding small molecule binding virus receptor activity exogenous protein binding extracellular matrix binding enzyme binding protease binding transforming growth factor beta binding growth factor binding cytokine binding cell adhesion molecule binding protein-containing complex binding integrin binding signaling receptor binding kinase binding protein kinase C binding protein kinase binding	biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host viral life cycle entry into host cell by a symbiont-containing vacuole biological process involved in interaction with host biological process involved in symbiotic interaction regulation of localization regulation of biological process negative regulation of lipid transport transport regulation of transport biological regulation biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host viral life cycle entry into host cell by a symbiont-containing vacuole biological process involved in interaction with host biological process involved in symbiotic interaction regulation of localization regulation of biological process negative regulation of lipid transport transport regulation of transport biological regulation negative regulation of biological process lipid localization lipid transport negative regulation of transport regulation of lipid transport establishment of localization negative regulation of lipid localization localization regulation of lipid localization macromolecule localization cell adhesion substrate adhesion-dependent cell spreading cell-substrate adhesion cellular process multicellular organismal process biosynthetic process cytokine production metabolic process macromolecule metabolic process gene expression macromolecule biosynthetic process transforming growth factor beta production cell migration cell motility regulation of cellular process lipid storage regulation of lipid storage negative regulation of lipid storage negative regulation of cellular process nutrient storage monoatomic ion transmembrane transport calcium ion transport metal ion transport monoatomic cation transmembrane transport transmembrane transport monoatomic ion transport monoatomic cation transport calcium ion transmembrane transport cellular response to stimulus signal transduction in absence of ligand response to stimulus cell surface receptor signaling pathway signaling cell death extrinsic apoptotic signaling pathway cell communication apoptotic signaling pathway extrinsic apoptotic signaling pathway in absence of ligand signal transduction apoptotic process programmed cell death cell population proliferation positive regulation of cell population proliferation positive regulation of osteoblast proliferation positive regulation of biological process osteoblast proliferation regulation of cell population proliferation regulation of osteoblast proliferation positive regulation of cellular process regulation of plasma lipoprotein particle levels regulation of low-density lipoprotein particle clearance negative regulation of low-density lipoprotein particle clearance plasma lipoprotein particle clearance negative regulation of lipoprotein particle clearance regulation of lipoprotein particle clearance regulation of multicellular organismal process low-density lipoprotein particle clearance negative regulation of multicellular organismal process import into cell regulation of cellular component organization regulation of phagocytosis regulation of vesicle-mediated transport vesicle-mediated transport cellular component organization phagocytosis cellular component organization or biogenesis endocytosis regulation of endocytosis positive regulation of cell communication regulation of signaling positive regulation of signal transduction positive regulation of intracellular signal transduction regulation of signal transduction intracellular signal transduction positive regulation of response to stimulus regulation of intracellular signal transduction regulation of response to stimulus regulation of cell communication positive regulation of signaling developmental process wound healing epithelium development morphogenesis of an epithelium epiboly involved in wound healing tissue development morphogenesis of an epithelial sheet wound healing, spreading of epidermal cells tissue morphogenesis anatomical structure morphogenesis response to stress anatomical structure development epiboly wound healing, spreading of cells response to wounding chemotaxis negative chemotaxis taxis response to chemical response to external stimulus locomotion negative regulation of signaling regulation of programmed cell death negative regulation of cell communication negative regulation of extrinsic apoptotic signaling pathway negative regulation of apoptotic signaling pathway negative regulation of response to stimulus negative regulation of programmed cell death regulation of apoptotic process negative regulation of signal transduction regulation of extrinsic apoptotic signaling pathway negative regulation of apoptotic process regulation of apoptotic signaling pathway negative regulation of lipoprotein metabolic process regulation of protein metabolic process lipoprotein metabolic process negative regulation of metabolic process primary metabolic process regulation of macromolecule metabolic process regulation of primary metabolic process regulation of lipoprotein metabolic process protein metabolic process regulation of metabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process heterotypic cell-cell adhesion cell-cell adhesion apoptotic cell clearance modulation by symbiont of entry into host negative regulation of entry of bacterium into host cell entry of bacterium into host cell regulation of entry of bacterium into host cell regulation of biological process involved in symbiotic interaction cell-matrix adhesion regulation of developmental process cellular developmental process negative regulation of developmental process macrophage derived foam cell differentiation regulation of cell differentiation negative regulation of macrophage derived foam cell differentiation foam cell differentiation cell differentiation regulation of macrophage derived foam cell differentiation negative regulation of cell differentiation positive regulation of cytosolic calcium ion concentration regulation of biological quality blood vessel morphogenesis tube development angiogenesis vasculature development circulatory system development multicellular organism development tube morphogenesis anatomical structure formation involved in morphogenesis blood vessel development system development apolipoprotein A-I-mediated signaling pathway intracellular signaling cassette MAPK cascade ERK1 and ERK2 cascade formation of primary germ layer embryonic morphogenesis embryo development gastrulation endoderm development endoderm formation endodermal cell differentiation integrin-mediated signaling pathway cell adhesion mediated by integrin positive regulation of cell adhesion regulation of cell adhesion vasculogenesis positive regulation of locomotion regulation of cell motility positive regulation of cell migration regulation of locomotion positive regulation of cell motility regulation of cell migration small GTPase-mediated signal transduction regulation of small GTPase mediated signal transduction positive regulation of small GTPase mediated signal transduction	membrane-bounded organelle intracellular anatomical structure membrane intracellular vesicle intracellular membrane-bounded organelle endomembrane system specific granule membrane intracellular organelle cytoplasmic vesicle membrane cellular anatomical structure bounding membrane of organelle vesicle membrane cytoplasmic vesicle organelle membrane-bounded organelle intracellular anatomical structure membrane intracellular vesicle intracellular membrane-bounded organelle endomembrane system specific granule membrane intracellular organelle cytoplasmic vesicle membrane cellular anatomical structure bounding membrane of organelle vesicle membrane cytoplasmic vesicle organelle secretory granule secretory vesicle cytoplasm vesicle organelle membrane secretory granule membrane specific granule cell periphery protein-containing complex plasma membrane protein complex plasma membrane membrane protein complex alphav-beta3 integrin-PKCalpha complex cell surface external side of plasma membrane side of membrane integrin alphav-beta5 complex integrin complex plasma membrane signaling receptor complex signaling receptor complex protein complex involved in cell adhesion integrin alphav-beta8 complex extracellular exosome extracellular vesicle extracellular organelle extracellular region extracellular membrane-bounded organelle intracellular membraneless organelle actin cytoskeleton plasma membrane bounded cell projection cell projection actin-based cell projection cytoskeleton membraneless organelle plasma membrane region microvillus microvillus membrane cell projection membrane alphav-beta3 integrin-HMGB1 complex alphav-beta3 integrin-IGF-1-IGF1R complex integrin alphav-beta3 complex anchoring junction cell junction focal adhesion cell-substrate junction ruffle cell leading edge leading edge membrane ruffle membrane phagocytic vesicle endocytic vesicle integrin alphav-beta1 complex lamellipodium membrane lamellipodium integrin alphav-beta6 complex filopodium membrane filopodium

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR033760	Integrin beta N-terminal	Domain
B	IPR036465	von Willebrand factor A-like domain superfamily	Homologous Superfamily
B	IPR032695	Integrin domain superfamily	Homologous Superfamily
B	IPR002369	Integrin beta subunit, VWA domain	Domain
B	IPR040622	Integrin beta, epidermal growth factor-like domain 1	Domain
B	IPR036349	Integrin beta tail domain superfamily	Homologous Superfamily
B	IPR014836	Integrin beta subunit, cytoplasmic domain	Domain
B	IPR012896	Integrin beta subunit, tail	Domain
B	IPR013111	Epidermal growth factor-like domain, extracellular	Domain
B	IPR057073	Integrin beta, epidermal growth factor-like domain 2	Domain
B	IPR015812	Integrin beta subunit	Family
B	IPR057243	Integrins beta, I-EGF domain, conserved site	Conserved Site
B	IPR016201	PSI domain	Domain
A	IPR013517	FG-GAP repeat	Repeat
A	IPR048286	Integrin alpha, third immunoglobulin-like domain	Domain
A	IPR013649	Integrin alpha, first immunoglubulin-like domain	Domain
A	IPR048285	Integrin alpha, second immunoglobulin-like domain	Domain
A	IPR032695	Integrin domain superfamily	Homologous Superfamily
A	IPR013519	Integrin alpha beta-propellor	Repeat
A	IPR000413	Integrin alpha chain	Family
A	IPR028994	Integrin alpha, N-terminal	Homologous Superfamily
A	IPR018184	Integrin alpha chain, C-terminal cytoplasmic region, conserved site	Conserved Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B	: P05106	Glanzmann thrombasthenia 1 platelet-type bleeding disorder 16 carotid artery thrombosis coronary thrombosis thrombocytopenia acute coronary syndrome intracerebral hemorrhage myocardial infarction prostate cancer Gliosis osteopetrosis neonatal thrombocytopenia Glanzmann thrombasthenia schizophrenia glioblastoma Glanzmann thrombasthenia 1 platelet-type bleeding disorder 16 carotid artery thrombosis coronary thrombosis thrombocytopenia acute coronary syndrome intracerebral hemorrhage myocardial infarction prostate cancer Gliosis osteopetrosis neonatal thrombocytopenia Glanzmann thrombasthenia schizophrenia glioblastoma hip fracture tuberculosis autism malignant glioma cerebrovascular disorder ovarian cancer peripheral neuropathy spondyloarthropathy interstitial cystitis autism spectrum disorder malignant mesothelioma autosomal dominant macrothrombocytopenia pilocytic astrocytoma hypothyroidism malignant colon neoplasm malignant pancreatic neoplasm breast cancer osteosarcoma congenital anemia peripheral nervous system disease exocrine pancreatic carcinoma
A	: P06756	Acute Cerebrovascular Accidents glioblastoma intracerebral hemorrhage myopathy osteosarcoma rheumatoid arthritis breast cancer cerebrovascular disorder hereditary spastic paraplegia large cell medulloblastoma nasopharyngeal carcinoma ovarian cancer tuberculosis diabetes mellitus inflammatory bowel disease Acute Cerebrovascular Accidents glioblastoma intracerebral hemorrhage myopathy osteosarcoma rheumatoid arthritis breast cancer cerebrovascular disorder hereditary spastic paraplegia large cell medulloblastoma nasopharyngeal carcinoma ovarian cancer tuberculosis diabetes mellitus inflammatory bowel disease medulloblastoma non-small cell lung carcinoma pilocytic astrocytoma

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

URL: https://www.rcsb.org/annotations/1L5G

⇱ Annotations: 1L5G