1R4M | pdb_00001r4m

APPBP1-UBA3-NEDD8, an E1-ubiquitin-like protein complex

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
L	d1r4ml_	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	Ubiquitin-like	Ubiquitin-related	Nedd8	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
I [auth K]	d1r4mk_	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	Ubiquitin-like	Ubiquitin-related	Nedd8	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
F [auth J]	d1r4mj_	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	Ubiquitin-like	Ubiquitin-related	Nedd8	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C [auth I]	d1r4mi_	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	Ubiquitin-like	Ubiquitin-related	Nedd8	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
H [auth F]	d1r4mf_	Alpha and beta proteins (a/b)	Activating enzymes of the ubiquitin-like proteins	Activating enzymes of the ubiquitin-like proteins	Ubiquitin activating enzymes (UBA)	UBA3	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
K [auth H]	d1r4mh_	Alpha and beta proteins (a/b)	Activating enzymes of the ubiquitin-like proteins	Activating enzymes of the ubiquitin-like proteins	Ubiquitin activating enzymes (UBA)	UBA3	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
E [auth D]	d1r4md_	Alpha and beta proteins (a/b)	Activating enzymes of the ubiquitin-like proteins	Activating enzymes of the ubiquitin-like proteins	Ubiquitin activating enzymes (UBA)	UBA3	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d1r4mb_	Alpha and beta proteins (a/b)	Activating enzymes of the ubiquitin-like proteins	Activating enzymes of the ubiquitin-like proteins	Ubiquitin activating enzymes (UBA)	UBA3	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d1r4ma_	Alpha and beta proteins (a/b)	Activating enzymes of the ubiquitin-like proteins	Activating enzymes of the ubiquitin-like proteins	Ubiquitin activating enzymes (UBA)	Amyloid beta precursor protein-binding protein 1, APPBP1	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
J [auth G]	d1r4mg_	Alpha and beta proteins (a/b)	Activating enzymes of the ubiquitin-like proteins	Activating enzymes of the ubiquitin-like proteins	Ubiquitin activating enzymes (UBA)	Amyloid beta precursor protein-binding protein 1, APPBP1	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
G [auth E]	d1r4me_	Alpha and beta proteins (a/b)	Activating enzymes of the ubiquitin-like proteins	Activating enzymes of the ubiquitin-like proteins	Ubiquitin activating enzymes (UBA)	Amyloid beta precursor protein-binding protein 1, APPBP1	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D [auth C]	d1r4mc_	Alpha and beta proteins (a/b)	Activating enzymes of the ubiquitin-like proteins	Activating enzymes of the ubiquitin-like proteins	Ubiquitin activating enzymes (UBA)	Amyloid beta precursor protein-binding protein 1, APPBP1	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L	SCOP2B Superfamily	Ubiquitin-like	8034470	3000157	SCOP2B (2022-06-29)
I [auth K]	SCOP2B Superfamily	Ubiquitin-like	8034470	3000157	SCOP2B (2022-06-29)
F [auth J]	SCOP2B Superfamily	Ubiquitin-like	8034470	3000157	SCOP2B (2022-06-29)
C [auth I]	SCOP2B Superfamily	Ubiquitin-like	8034470	3000157	SCOP2B (2022-06-29)
H [auth F]	SCOP2B Superfamily	E2 binding domain-like	8003941	3000147	SCOP2B (2022-06-29)
H [auth F]	SCOP2B Superfamily	Activating enzymes of the ubiquitin-like proteins	8003542	3000112	SCOP2B (2022-06-29)
H [auth F]	SCOP2B Superfamily	Activating enzymes of the ubiquitin-like proteins	8003542	3000112	SCOP2B (2022-06-29)
H [auth F]	SCOP2B Superfamily	CC (catalytic cysteine) domain-like	8003549	3000140	SCOP2B (2022-06-29)
K [auth H]	SCOP2B Superfamily	CC (catalytic cysteine) domain-like	8003549	3000140	SCOP2B (2022-06-29)
K [auth H]	SCOP2B Superfamily	Activating enzymes of the ubiquitin-like proteins	8003542	3000112	SCOP2B (2022-06-29)
K [auth H]	SCOP2B Superfamily	E2 binding domain-like	8003941	3000147	SCOP2B (2022-06-29)
K [auth H]	SCOP2B Superfamily	Activating enzymes of the ubiquitin-like proteins	8003542	3000112	SCOP2B (2022-06-29)
E [auth D]	SCOP2B Superfamily	CC (catalytic cysteine) domain-like	8003549	3000140	SCOP2B (2022-06-29)
E [auth D]	SCOP2B Superfamily	Activating enzymes of the ubiquitin-like proteins	8003542	3000112	SCOP2B (2022-06-29)
E [auth D]	SCOP2B Superfamily	Activating enzymes of the ubiquitin-like proteins	8003542	3000112	SCOP2B (2022-06-29)
E [auth D]	SCOP2B Superfamily	E2 binding domain-like	8003941	3000147	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Activating enzymes of the ubiquitin-like proteins	8003542	3000112	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	CC (catalytic cysteine) domain-like	8003549	3000140	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	E2 binding domain-like	8003941	3000147	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Activating enzymes of the ubiquitin-like proteins	8003542	3000112	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Activating enzymes of the ubiquitin-like proteins	8003537	3000112	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Activating enzymes of the ubiquitin-like proteins	8003537	3000112	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	CC (catalytic cysteine) domain-like	8003548	3000140	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Duplicated CC (catalytic cysteine) domain-like	8003546	3000141	SCOP2B (2022-06-29)
J [auth G]	SCOP2B Superfamily	CC (catalytic cysteine) domain-like	8003548	3000140	SCOP2B (2022-06-29)
J [auth G]	SCOP2B Superfamily	Duplicated CC (catalytic cysteine) domain-like	8003546	3000141	SCOP2B (2022-06-29)
J [auth G]	SCOP2B Superfamily	Activating enzymes of the ubiquitin-like proteins	8003537	3000112	SCOP2B (2022-06-29)
J [auth G]	SCOP2B Superfamily	Activating enzymes of the ubiquitin-like proteins	8003537	3000112	SCOP2B (2022-06-29)
G [auth E]	SCOP2B Superfamily	Activating enzymes of the ubiquitin-like proteins	8003537	3000112	SCOP2B (2022-06-29)
G [auth E]	SCOP2B Superfamily	CC (catalytic cysteine) domain-like	8003548	3000140	SCOP2B (2022-06-29)
G [auth E]	SCOP2B Superfamily	Duplicated CC (catalytic cysteine) domain-like	8003546	3000141	SCOP2B (2022-06-29)
G [auth E]	SCOP2B Superfamily	Activating enzymes of the ubiquitin-like proteins	8003537	3000112	SCOP2B (2022-06-29)
D [auth C]	SCOP2B Superfamily	Duplicated CC (catalytic cysteine) domain-like	8003546	3000141	SCOP2B (2022-06-29)
D [auth C]	SCOP2B Superfamily	Activating enzymes of the ubiquitin-like proteins	8003537	3000112	SCOP2B (2022-06-29)
D [auth C]	SCOP2B Superfamily	CC (catalytic cysteine) domain-like	8003548	3000140	SCOP2B (2022-06-29)
D [auth C]	SCOP2B Superfamily	Activating enzymes of the ubiquitin-like proteins	8003537	3000112	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	S4	e1r4mL1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: S4	ECOD (v294.1)
I [auth K]	S4	e1r4mK1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: S4	ECOD (v294.1)
F [auth J]	S4	e1r4mJ1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: S4	ECOD (v294.1)
C [auth I]	S4	e1r4mI1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: S4	ECOD (v294.1)
H [auth F]	PolyA_pol	e1r4mF3	A: a/b three-layered sandwiches	X: POZ domain	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: PolyA_pol	ECOD (v294.1)
H [auth F]	TRI-like_N	e1r4mF2	A: a/b three-layered sandwiches	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: TRI-like_N	ECOD (v294.1)
K [auth H]	PolyA_pol	e1r4mH3	A: a/b three-layered sandwiches	X: POZ domain	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: PolyA_pol	ECOD (v294.1)
K [auth H]	TRI-like_N	e1r4mH1	A: a/b three-layered sandwiches	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: TRI-like_N	ECOD (v294.1)
E [auth D]	PolyA_pol	e1r4mD3	A: a/b three-layered sandwiches	X: POZ domain	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: PolyA_pol	ECOD (v294.1)
E [auth D]	TRI-like_N	e1r4mD1	A: a/b three-layered sandwiches	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: TRI-like_N	ECOD (v294.1)
B	PolyA_pol	e1r4mB3	A: a/b three-layered sandwiches	X: POZ domain	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: PolyA_pol	ECOD (v294.1)
B	TRI-like_N	e1r4mB1	A: a/b three-layered sandwiches	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: TRI-like_N	ECOD (v294.1)
A	RS_preATP-grasp-like	e1r4mA1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: RS_preATP-grasp-like	ECOD (v294.1)
J [auth G]	RS_preATP-grasp-like	e1r4mG1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: RS_preATP-grasp-like	ECOD (v294.1)
G [auth E]	RS_preATP-grasp-like	e1r4mE1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: RS_preATP-grasp-like	ECOD (v294.1)
D [auth C]	RS_preATP-grasp-like	e1r4mC1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: RS_preATP-grasp-like	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
L	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
I [auth K]	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
F [auth J]	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
C [auth I]	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
H [auth F]	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
H [auth F]	1.10.10.520	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Ubiquitin activating enzymes (Uba3). Chain: B, domain 2	CATH (4.3.0)
H [auth F]	3.10.20.260	Alpha Beta	Roll	Ubiquitin-like (UB roll)	NEDD8-activating enzyme E1, catalytic subunit	CATH (4.3.0)
K [auth H]	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
K [auth H]	1.10.10.520	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Ubiquitin activating enzymes (Uba3). Chain: B, domain 2	CATH (4.3.0)
K [auth H]	3.10.20.260	Alpha Beta	Roll	Ubiquitin-like (UB roll)	NEDD8-activating enzyme E1, catalytic subunit	CATH (4.3.0)
E [auth D]	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
E [auth D]	1.10.10.520	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Ubiquitin activating enzymes (Uba3). Chain: B, domain 2	CATH (4.3.0)
E [auth D]	3.10.20.260	Alpha Beta	Roll	Ubiquitin-like (UB roll)	NEDD8-activating enzyme E1, catalytic subunit	CATH (4.3.0)
B	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
B	1.10.10.520	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Ubiquitin activating enzymes (Uba3). Chain: B, domain 2	CATH (4.3.0)
B	3.10.20.260	Alpha Beta	Roll	Ubiquitin-like (UB roll)	NEDD8-activating enzyme E1, catalytic subunit	CATH (4.3.0)
A	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
J [auth G]	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
G [auth E]	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
D [auth C]	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C [auth I], F [auth J], I [auth K], L	PF00240	Ubiquitin family (ubiquitin)	Ubiquitin family	This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...	This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5].	Domain
B, E [auth D], H [auth F], K [auth H]	PF00899	ThiF family (ThiF)	ThiF family	This domain is found in ubiquitin activating E1 family and members of the bacterial ThiF/MoeB/HesA family. It is repeated in Ubiquitin-activating enzyme E1 [1-3].	Domain
B, E [auth D], H [auth F], K [auth H]	PF08825	E2 binding domain (E2_bind)	E2 binding domain	E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The domain resembles ubiquitin, and recruits the catalytic core of the E2 enz ...	E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The domain resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains [1].	Domain
A, D [auth C], G [auth E], J [auth G]	PF00899	ThiF family (ThiF)	ThiF family	This domain is found in ubiquitin activating E1 family and members of the bacterial ThiF/MoeB/HesA family. It is repeated in Ubiquitin-activating enzyme E1 [1-3].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth I], F [auth J], I [auth K], L	Ubiquitin-like protein NEDD8	protein tag activity molecular tag activity ubiquitin protein ligase binding protein binding binding ubiquitin-like protein ligase binding enzyme binding	cellular response to stimulus cellular response to nitrogen compound response to stimulus response to alcohol response to oxygen-containing compound response to nitrogen compound cellular response to oxygen-containing compound response to alkaloid cellular response to chemical stimulus cellular response to alcohol response to camptothecin cellular response to camptothecin response to chemical cellular process cellular response to stimulus cellular response to nitrogen compound response to stimulus response to alcohol response to oxygen-containing compound response to nitrogen compound cellular response to oxygen-containing compound response to alkaloid cellular response to chemical stimulus cellular response to alcohol response to camptothecin cellular response to camptothecin response to chemical cellular process cellular response to alkaloid macromolecule modification metabolic process primary metabolic process protein metabolic process macromolecule metabolic process protein modification process catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process protein catabolic process macromolecule catabolic process regulation of biological process regulation of cellular process regulation of protein metabolic process biological regulation regulation of macromolecule metabolic process regulation of primary metabolic process regulation of proteolysis proteolysis regulation of metabolic process post-translational protein modification protein neddylation protein modification by small protein conjugation protein modification by small protein conjugation or removal developmental process anatomical structure morphogenesis anatomical structure development ubiquitin-dependent protein catabolic process multicellular organismal process regulation of cellular component organization cellular component organization cellular component biogenesis multicellular organism development cellular component assembly regulation of postsynapse assembly cell junction assembly regulation of synapse structure or activity synapse organization cellular component organization or biogenesis regulation of synapse assembly regulation of biological quality system development postsynapse organization postsynapse assembly regulation of postsynapse organization nervous system development regulation of cellular component biogenesis regulation of cell junction assembly regulation of synapse organization cell junction organization synapse assembly RNA metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II regulation of biosynthetic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription localization macromolecule localization intracellular protein localization	extracellular exosome membrane-bounded organelle extracellular vesicle cellular anatomical structure extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol nucleus extracellular exosome membrane-bounded organelle extracellular vesicle cellular anatomical structure extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen nuclear lumen synapse cell junction glutamatergic synapse postsynapse
B, E [auth D], H [auth F], K [auth H]	ubiquitin-activating enzyme E1C	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding protein heterodimerization activity protein binding protein dimerization activity aminoacyltransferase activity ubiquitin-like protein transferase activity NEDD8 transferase activity catalytic activity, acting on a protein acyltransferase activity transferase activity catalytic activity NEDD8 activating enzyme activity ubiquitin-like modifier activating enzyme activity ligase activity, forming carbon-sulfur bonds ligase activity ATP-dependent activity identical protein binding	macromolecule modification metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein neddylation protein modification by small protein conjugation protein modification by small protein conjugation or removal regulation of biological process regulation of cellular process biological regulation macromolecule modification metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein neddylation protein modification by small protein conjugation protein modification by small protein conjugation or removal regulation of biological process regulation of cellular process biological regulation cell cycle regulation of cell cycle endomitotic cell cycle mitotic cell cycle proteolysis	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle
A, D [auth C], G [auth E], J [auth G]	amyloid beta precursor protein-binding protein 1	protein heterodimerization activity protein binding binding protein dimerization activity ubiquitin protein ligase binding ubiquitin-like protein ligase binding enzyme binding NEDD8 activating enzyme activity ubiquitin-like modifier activating enzyme activity ligase activity, forming carbon-sulfur bonds catalytic activity, acting on a protein catalytic activity ligase activity ATP-dependent activity	cellular response to stimulus regulation of cellular process regulation of cell cycle phase transition response to stimulus signaling G2/M transition of mitotic cell cycle negative regulation of biological process negative regulation of cell cycle cell cycle phase transition intracellular signal transduction mitotic cell cycle negative regulation of mitotic cell cycle cell communication mitotic G2/M transition checkpoint regulation of mitotic cell cycle cellular response to stimulus regulation of cellular process regulation of cell cycle phase transition response to stimulus signaling G2/M transition of mitotic cell cycle negative regulation of biological process negative regulation of cell cycle cell cycle phase transition intracellular signal transduction mitotic cell cycle negative regulation of mitotic cell cycle cell communication mitotic G2/M transition checkpoint regulation of mitotic cell cycle mitotic DNA integrity checkpoint signaling negative regulation of cellular process negative regulation of cell cycle phase transition signal transduction cell cycle DNA replication checkpoint signaling regulation of cell cycle cell cycle process cell cycle G2/M phase transition regulation of biological process mitotic DNA replication checkpoint signaling negative regulation of mitotic cell cycle phase transition regulation of G2/M transition of mitotic cell cycle regulation of cell cycle process biological regulation DNA integrity checkpoint signaling regulation of cell cycle G2/M phase transition negative regulation of cell cycle process cell cycle checkpoint signaling regulation of mitotic cell cycle phase transition mitotic cell cycle checkpoint signaling mitotic cell cycle process negative regulation of cell cycle G2/M phase transition cellular process negative regulation of G2/M transition of mitotic cell cycle mitotic cell cycle phase transition multicellular organismal process regulation of cellular component organization cellular component organization cellular component biogenesis multicellular organism development cellular component assembly regulation of postsynapse assembly cell junction assembly anatomical structure development regulation of synapse structure or activity synapse organization cellular component organization or biogenesis regulation of synapse assembly regulation of biological quality system development developmental process postsynapse organization postsynapse assembly regulation of postsynapse organization nervous system development regulation of cellular component biogenesis regulation of cell junction assembly regulation of synapse organization cell junction organization synapse assembly neuron apoptotic process apoptotic process cell death programmed cell death regulation of apoptotic process regulation of programmed cell death regulation of neuron apoptotic process primary metabolic process macromolecule modification metabolic process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein neddylation protein modification by small protein conjugation protein modification by small protein conjugation or removal	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane protein-containing complex synapse cell junction glutamatergic synapse

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth I], F [auth J], I [auth K], L	IPR019954	Ubiquitin conserved site	Conserved Site
C [auth I], F [auth J], I [auth K], L	IPR050158	Ubiquitin and ubiquitin-like	Family
C [auth I], F [auth J], I [auth K], L	IPR038738	Nedd8-like ubiquitin	Domain
C [auth I], F [auth J], I [auth K], L	IPR000626	Ubiquitin-like domain	Domain
C [auth I], F [auth J], I [auth K], L	IPR019956	Ubiquitin domain	Domain
C [auth I], F [auth J], I [auth K], L	IPR029071	Ubiquitin-like domain superfamily	Homologous Superfamily
B, E [auth D], H [auth F], K [auth H]	IPR030468	NEDD8-activating enzyme E1 catalytic subunit, N-terminal domain	Domain
B, E [auth D], H [auth F], K [auth H]	IPR014929	E2 binding	Domain
B, E [auth D], H [auth F], K [auth H]	IPR045886	ThiF/MoeB/HesA family	Family
B, E [auth D], H [auth F], K [auth H]	IPR000594	THIF-type NAD/FAD binding fold	Domain
B, E [auth D], H [auth F], K [auth H]	IPR035985	Ubiquitin-activating enzyme-like	Homologous Superfamily
B, E [auth D], H [auth F], K [auth H]	IPR033127	Ubiquitin-activating enzyme E1, Cys active site	Active Site
B, E [auth D], H [auth F], K [auth H]	IPR023318	Ubiquitin activating enzyme, alpha domain superfamily	Homologous Superfamily
A, D [auth C], G [auth E], J [auth G]	IPR045886	ThiF/MoeB/HesA family	Family
A, D [auth C], G [auth E], J [auth G]	IPR030667	NEDD8-activating enzyme E1 regulatory subunit APP-BP1	Family
A, D [auth C], G [auth E], J [auth G]	IPR000594	THIF-type NAD/FAD binding fold	Domain
A, D [auth C], G [auth E], J [auth G]	IPR035985	Ubiquitin-activating enzyme-like	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C [auth I], F [auth J], I [auth K], L	Pharos: Q15843	language disorder
B, E [auth D], H [auth F], K [auth H]	Pharos: Q8TBC4	amyotrophic lateral sclerosis lymphoplasmacytic lymphoma dermatomyositis myopathy juvenile dermatomyositis plasma cell myeloma
A, D [auth C], G [auth E], J [auth G]	Pharos: Q13564	lung cancer pancreatic intraductal papillary-mucinous neoplasm medulloblastoma plasma cell myeloma ovarian cancer

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

URL: https://www.rcsb.org/annotations/1R4M

⇱ Annotations: 1R4M