1CF4 | pdb_00001cf4
CDC42/ACK GTPASE-BINDING DOMAIN COMPLEX
- PDB DOI: https://doi.org/10.2210/pdb1CF4/pdb
- BMRB: 4700
- Classification: TRANSFERASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 1999-03-23 Released: 1999-06-18
- Deposition Author(s): Mott, H.R., Owen, D., Nietlispach, D., Lowe, P.N., Lim, L., Laue, E.D.
Experimental Data Snapshot
- Method: SOLUTION NMR
- Conformers Calculated: 100
- Conformers Submitted: 20
- Selection Criteria: LOWEST ENERGY
wwPDB Validation 3D Report Full Report
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Structure of the small G protein Cdc42 bound to the GTPase-binding domain of ACK.
Mott, H.R., Owen, D., Nietlispach, D., Lowe, P.N., Manser, E., Lim, L., Laue, E.D.(1999) Nature 399: 384-388
- PubMed: 10360579 Search on PubMed
- DOI: https://doi.org/10.1038/20732
- Primary Citation Related Structures:
1CF4 - PubMed Abstract:
The proteins Cdc42 and Rac are members of the Rho family of small GTPases (G proteins), which control signal-transduction pathways that lead to rearrangements of the cell cytoskeleton, cell differentiation and cell proliferation. They do so by binding to downstream effector proteins. Some of these, known as CRIB (for Cdc42/Rac interactive-binding) proteins, bind to both Cdc42 and Rac, such as the PAK1-3 serine/threonine kinases, whereas others are specific for Cdc42, such as the ACK tyrosine kinases and the Wiscott-Aldrich-syndrome proteins (WASPs). The effector loop of Cdc42 and Rac (comprising residues 30-40, also called switch I), is one of two regions which change conformation on exchange of GDP for GTP. This region is almost identical in Cdc42 and Racs, indicating that it does not determine the specificity of these G proteins. Here we report the solution structure of the complex of Cdc42 with the GTPase-binding domain ofACK. Both proteins undergo significant conformational changes on binding, to form a new type of G-protein/effector complex. The interaction extends the beta-sheet in Cdc42 by binding an extended strand from ACK, as seen in Ras/effector interactions, but it also involves other regions of the G protein that are important for determining the specificity of effector binding.
- Cambridge Centre for Molecular Recognition, Department of Biochemistry, University of Cambridge, UK.
Organizational Affiliation:
Explore in 3D: Structure | Sequence Annotations | Validation Report | Ligand Interaction (GNP)
Explore in 3D: Structure | Sequence Annotations | Validation Report | Ligand Interaction (GNP)
Global Symmetry: Asymmetric - C1
Global Stoichiometry: Hetero 2-mer - A1B1
Find Similar Assemblies
Biological assembly 1 assigned by authors.
Macromolecule Content
- Total Structure Weight: 25.83 kDa
- Atom Count: 1,813
- Modeled Residue Count: 228
- Deposited Residue Count: 228
- Unique protein chains: 2
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| PROTEIN (CDC42 HOMOLOG) | 184 | Homo sapiens | Mutation(s): 0 EC: 3.6.5.2 | 👁 Image | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P60953 (Homo sapiens) Explore P60953 Go to UniProtKB: P60953 | |||||
PHAROS: P60953 GTEx: ENSG00000070831 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P60953 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| PROTEIN (ACTIVATED P21CDC42HS KINASE) | 44 | Homo sapiens | Mutation(s): 0 EC: 2.7.11.1 (UniProt), 2.7.10.2 (UniProt) | 👁 Image | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q07912 (Homo sapiens) Explore Q07912 Go to UniProtKB: Q07912 | |||||
PHAROS: Q07912 GTEx: ENSG00000061938 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q07912 | ||||
Sequence AnnotationsExpand | |||||
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| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GNP Query on GNP Download Ideal Coordinates CCD File | D [auth A] | PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER C10 H17 N6 O13 P3 UQABYHGXWYXDTK-UUOKFMHZSA-N | 👁 Image | ||
| MG Query on MG Download Ideal Coordinates CCD File | C [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N | 👁 Image | ||
Experimental Data
- Method: SOLUTION NMR
- Conformers Calculated: 100
- Conformers Submitted: 20
- Selection Criteria: LOWEST ENERGY
Deposition Data
- Released Date: 1999-06-18 Deposition Author(s): Mott, H.R., Owen, D., Nietlispach, D., Lowe, P.N., Lim, L., Laue, E.D.
Revision History (Full details and data files)
- Version 1.0: 1999-06-18
Type: Initial release - Version 1.1: 2008-04-26
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2022-02-16
Changes: Data collection, Database references, Derived calculations, Experimental preparation, Refinement description - Version 1.4: 2023-12-27
Changes: Data collection
