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1LS6 | pdb_00001ls6
Human SULT1A1 complexed with PAP and p-Nitrophenol
- PDB DOI: https://doi.org/10.2210/pdb1LS6/pdb
- Classification: TRANSFERASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2002-05-17 Released: 2003-08-05
- Deposition Author(s): Gamage, N.U., Barnett, A.C., Tresillian, M., Latham, C.F., Liyou, N.E., McManus, M.E., Martin, J.L.
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.206 (Depositor), 0.212 (DCC)
- R-Value Work: 0.181 (Depositor), 0.191 (DCC)
- R-Value Observed: 0.191 (Depositor)
Starting Model: experimental
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Literature
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Structure of a human carcinogen-converting enzyme, SULT1A1. Structural and kinetic implications of substrate inhibition.
Gamage, N.U., Duggleby, R.G., Barnett, A.C., Tresillian, M., Latham, C.F., Liyou, N.E., McManus, M.E., Martin, J.L.(2003) J Biological Chem 278: 7655-7662
- PubMed: 12471039 Search on PubMed
- DOI: https://doi.org/10.1074/jbc.M207246200
- Primary Citation Related Structures:
1LS6 - PubMed Abstract:
Sulfonation catalyzed by sulfotransferase enzymes plays an important role in chemical defense mechanisms against various xenobiotics but also bioactivates carcinogens. A major human sulfotransferase, SULT1A1, metabolizes and/or bioactivates many endogenous compounds and is implicated in a range of cancers because of its ability to modify diverse promutagen and procarcinogen xenobiotics. The crystal structure of human SULT1A1 reported here is the first sulfotransferase structure complexed with a xenobiotic substrate. An unexpected finding is that the enzyme accommodates not one but two molecules of the xenobiotic model substrate p-nitrophenol in the active site. This result is supported by kinetic data for SULT1A1 that show substrate inhibition for this small xenobiotic. The extended active site of SULT1A1 is consistent with binding of diiodothyronine but cannot easily accommodate beta-estradiol, although both are known substrates. This observation, together with evidence for a disorder-order transition in SULT1A1, suggests that the active site is flexible and can adapt its architecture to accept diverse hydrophobic substrates with varying sizes, shapes and flexibility. Thus the crystal structure of SULT1A1 provides the molecular basis for substrate inhibition and reveals the first clues as to how the enzyme sulfonates a wide variety of lipophilic compounds.
- Department of Physiology and Pharmacology, School of Biomedical Sciences, University of Queensland, Brisbane, Queensland 4072, Australia.
Organizational Affiliation:
Explore in 3D: Structure | Sequence Annotations | Electron Density | Validation Report | Ligand Interaction (A3P)
Biological Assembly 1
Explore in 3D: Structure | Sequence Annotations | Electron Density | Validation Report | Ligand Interaction (A3P)
Global Symmetry: Asymmetric - C1
Global Stoichiometry: Monomer - A1
Find Similar Assemblies
Biological assembly 1 assigned by authors.
Macromolecule Content
- Total Structure Weight: 34.93 kDa
- Atom Count: 2,572
- Modeled Residue Count: 288
- Deposited Residue Count: 295
- Unique protein chains: 1
Macromolecules
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| aryl sulfotransferase | 295 | Homo sapiens | Mutation(s): 0 Gene Names: SULT1A1 EC: 2.8.2.1 | 👁 Image | |
UniProt & NIH Common Fund Data Resources | |||||
PHAROS: P50225 GTEx: ENSG00000196502 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P50225 | ||||
Sequence AnnotationsExpand | |||||
Reference Sequence | |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| A3P Download:Ideal Coordinates CCD File | B [auth A] | ADENOSINE-3'-5'-DIPHOSPHATE C10 H15 N5 O10 P2 WHTCPDAXWFLDIH-KQYNXXCUSA-N | 👁 Image | ||
| NPO Download:Ideal Coordinates CCD File | C [auth A], D [auth A] | P-NITROPHENOL C6 H5 N O3 BTJIUGUIPKRLHP-UHFFFAOYSA-N | 👁 Image | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.206 (Depositor), 0.212 (DCC)
- R-Value Work: 0.181 (Depositor), 0.191 (DCC)
- R-Value Observed: 0.191 (Depositor)
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 72.8 | α = 90 |
| b = 124.01 | β = 90 |
| c = 44.45 | γ = 90 |
| Software Name | Purpose |
|---|---|
| crystal | data collection |
| Crystal | data reduction |
| CNS | refinement |
| CrystalClear | data reduction |
| CrystalClear | data scaling |
| CNS | phasing |
Entry History
Deposition Data
- Released Date: 2003-08-05 Deposition Author(s): Gamage, N.U., Barnett, A.C., Tresillian, M., Latham, C.F., Liyou, N.E., McManus, M.E., Martin, J.L.
Revision History (Full details and data files)
- Version 1.0: 2003-08-05
Type: Initial release - Version 1.1: 2008-04-28
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2024-02-14
Changes: Data collection, Database references, Derived calculations, Refinement description
