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- Biological Assembly 1 (CIF - gz)
- Biological Assembly 1 (PDB - gz)
1TWE | pdb_00001twe
INTERLEUKIN 1 BETA MUTANT F101Y
- PDB DOI: https://doi.org/10.2210/pdb1TWE/pdb
- Classification: IMMUNE SYSTEM
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2004-06-30 Released: 2004-12-07
- Deposition Author(s): Adamek, D.H., Capsar, D.L.
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.201 (Depositor), 0.200 (DCC)
- R-Value Work: 0.184 (Depositor), 0.180 (DCC)
wwPDB Validation 3D Report Full Report
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Structural and energetic consequences of mutations in a solvated hydrophobic cavity.
Adamek, D.H., Guerrero, L., Blaber, M., Caspar, D.L.(2005) J Mol Biology 346: 307-318
- PubMed: 15663946 Search on PubMed
- DOI: https://doi.org/10.1016/j.jmb.2004.11.046
- Primary Citation Related Structures:
1S0L, 1T4Q, 1TOO, 1TP0, 1TWE, 1TWM - PubMed Abstract:
The structural and energetic consequences of modifications to the hydrophobic cavity of interleukin 1-beta (IL-1beta) are described. Previous reports demonstrated that the entirely hydrophobic cavity of IL-1beta contains positionally disordered water. To gain a better understanding of the nature of this cavity and the water therein, a number of mutant proteins were constructed by site-directed mutagenesis, designed to result in altered hydrophobicity of the cavity. These mutations involve the replacement of specific phenylalanine residues, which circumscribe the cavity, with tyrosine, tryptophan, leucine and isoleucine. Using differential scanning calorimetry to determine the relative stabilities of the wild-type and mutant proteins, we found all of the mutants to be destabilizing. X-ray crystallography was used to identify the structural consequences of the mutations. No clear correlation between the hydrophobicities of the specific side-chains introduced and the resulting stabilities was found.
- Institute of Molecular Biophysics, Florida State University, Tallahassee, FL 32306-4380, USA. daniel.adamek@msfc.nasa.gov
Organizational Affiliation:
Explore in 3D: Structure | Sequence Annotations | Electron Density | Validation Report
Explore in 3D: Structure | Sequence Annotations | Electron Density | Validation Report
Global Symmetry: Asymmetric - C1
Global Stoichiometry: Monomer - A1
Find Similar Assemblies
Biological assembly 1 assigned by authors.
Macromolecule Content
- Total Structure Weight: 17.41 kDa
- Atom Count: 1,301
- Modeled Residue Count: 153
- Deposited Residue Count: 153
- Unique protein chains: 1
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Interleukin-1 beta | 153 | Homo sapiens | Mutation(s): 1 Gene Names: IL1B | 👁 Image | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P01584 (Homo sapiens) Explore P01584 Go to UniProtKB: P01584 | |||||
PHAROS: P01584 GTEx: ENSG00000125538 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P01584 | ||||
Sequence AnnotationsExpand | |||||
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Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.201 (Depositor), 0.200 (DCC)
- R-Value Work: 0.184 (Depositor), 0.180 (DCC)
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 55 | α = 90 |
| b = 55 | β = 90 |
| c = 77 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| CNS | refinement |
| CNS | phasing |
Deposition Data
- Released Date: 2004-12-07 Deposition Author(s): Adamek, D.H., Capsar, D.L.
Revision History (Full details and data files)
- Version 1.0: 2004-12-07
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2018-04-04
Changes: Data collection - Version 1.4: 2021-10-27
Changes: Database references - Version 1.5: 2024-02-14
Changes: Data collection
