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2KNC | pdb_00002knc
Platelet integrin ALFAIIB-BETA3 transmembrane-cytoplasmic heterocomplex
- PDB DOI: https://doi.org/10.2210/pdb2KNC/pdb
- BMRB: 16496
- Classification: CELL ADHESION
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No
- Membrane Protein: Yes OPMPDBTMMemProtMDmpstruc
- Deposited: 2009-08-20 Released: 2009-09-29
- Deposition Author(s): Yang, J., Ma, Y., Page, R.C., Misra, S., Plow, E.F., Qin, J.
Experimental Data Snapshot
- Method: SOLUTION NMR
- Conformers Calculated: 98
- Conformers Submitted: 20
- Selection Criteria: structures with the lowest energy
wwPDB Validation3D Report Full Report
Literature
- 👁 Image
Download Mendeley
Structure of an integrin alphaIIb beta3 transmembrane-cytoplasmic heterocomplex provides insight into integrin activation.
Yang, J., Ma, Y.Q., Page, R.C., Misra, S., Plow, E.F., Qin, J.(2009) Proc Natl Acad Sci U S A 106: 17729-17734
- PubMed: 19805198 Search on PubMedSearch on PubMed Central
- DOI: https://doi.org/10.1073/pnas.0909589106
- Primary Citation Related Structures:
2KNC - PubMed Abstract:
Heterodimeric integrin adhesion receptors regulate diverse biological processes including angiogenesis, thrombosis and wound healing. The transmembrane-cytoplasmic domains (TMCDs) of integrins play a critical role in controlling activation of these receptors via an inside-out signaling mechanism, but the precise structural basis remains elusive. Here, we present the solution structure of integrin alphaIIb beta3 TMCD heterodimer, which reveals a right-handed coiled-coil conformation with 2 helices intertwined throughout the transmembrane region. The helices extend into the cytoplasm and form a clasp that differs significantly from a recently published alphaIIb beta3 TMCD structure. We show that while a point mutation in the clasp interface modestly activates alphaIIb beta3, additional mutations in the transmembrane interface have a synergistic effect, leading to extensive integrin activation. Detailed analyses and structural comparison with previous studies suggest that extensive integrin activation is a highly concerted conformational transition process, which involves transmembrane coiled-coil unwinding that is triggered by the membrane-mediated alteration and disengagement of the membrane-proximal clasp. Our results provide atomic insight into a type I transmembrane receptor heterocomplex and the mechanism of integrin inside-out transmembrane signaling.
- Department of Molecular Cardiology NB20, Lerner Research Institute, Cleveland Clinic, 9500 Euclid Avenue, Cleveland, OH 44195, USA.
Organizational Affiliation:
Explore in 3D: Structure | Sequence Annotations | Validation Report | Predict Membrane
Biological Assembly 1
Explore in 3D: Structure | Sequence Annotations | Validation Report | Predict Membrane
Global Symmetry: Asymmetric - C1
Global Stoichiometry: Hetero 2-mer - A1B1
Find Similar Assemblies
Biological assembly 1 assigned by authors.
Macromolecule Content
- Total Structure Weight: 14.83 kDa
- Atom Count: 1,045
- Modeled Residue Count: 133
- Deposited Residue Count: 133
- Unique protein chains: 2
Macromolecules
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Integrin alpha-IIb | 54 | Homo sapiens | Mutation(s): 0 Gene Names: ITGA2B, GP2B, ITGAB Membrane Entity: Yes | 👁 Image | |
UniProt & NIH Common Fund Data Resources | |||||
PHAROS: P08514 GTEx: ENSG00000005961 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P08514 | ||||
Sequence AnnotationsExpand | |||||
Reference Sequence | |||||
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Integrin beta-3 | 79 | Homo sapiens | Mutation(s): 0 Gene Names: ITGB3, GP3A Membrane Entity: Yes | 👁 Image | |
UniProt & NIH Common Fund Data Resources | |||||
PHAROS: P05106 GTEx: ENSG00000259207 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P05106 | ||||
Sequence AnnotationsExpand | |||||
Reference Sequence | |||||
Experimental Data & Validation
Experimental Data
- Method: SOLUTION NMR
- Conformers Calculated: 98
- Conformers Submitted: 20
- Selection Criteria: structures with the lowest energy
Entry History
Deposition Data
- Released Date: 2009-09-29 Deposition Author(s): Yang, J., Ma, Y., Page, R.C., Misra, S., Plow, E.F., Qin, J.
Revision History (Full details and data files)
- Version 1.0: 2009-09-29
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2011-08-10
Changes: Database references - Version 1.3: 2020-02-26
Changes: Data collection, Database references, Other - Version 1.4: 2021-08-18
Changes: Data collection, Database references, Experimental preparation, Structure summary - Version 1.5: 2023-06-14
Changes: Other - Version 1.6: 2024-05-08
Changes: Data collection, Database references
