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2LJE | pdb_00002lje
Biphosphorylated (747pY, 759pY) beta3 integrin cytoplasmic tail under membrane mimetic conditions
- PDB DOI: https://doi.org/10.2210/pdb2LJE/pdb
- BMRB: 17931
- Classification: MEMBRANE PROTEIN, CELL ADHESION
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No
- Membrane Protein: Yes OPM
- Deposited: 2011-09-11 Released: 2011-10-05
- Deposition Author(s): Deshmukh, L., Vinogradova, O.
Experimental Data Snapshot
- Method: SOLUTION NMR
- Conformers Calculated: 100
- Conformers Submitted: 15
- Selection Criteria: structures with the lowest energy
wwPDB Validation3D Report Full Report
Literature
- 👁 Image
Download Mendeley
Tyrosine phosphorylation as a conformational switch: a case study of integrin Beta3 cytoplasmic tail.
Deshmukh, L., Meller, N., Alder, N., Byzova, T., Vinogradova, O.(2011) J Biological Chem 286: 40943-40953
- PubMed: 21956114 Search on PubMedSearch on PubMed Central
- DOI: https://doi.org/10.1074/jbc.M111.231951
- Primary Citation Related Structures:
2LJD, 2LJE, 2LJF - PubMed Abstract:
Reversible protein phosphorylation is vital for many fundamental cellular processes. The actual impact of adding and removing phosphate group(s) is 3-fold: changes in the local/global geometry, alterations in the electrostatic potential and, as the result of both, modified protein-target interactions. Here we present a comprehensive structural investigation of the effects of phosphorylation on the conformational as well as functional states of a crucial cell surface receptor, α(IIb)β(3) integrin. We have analyzed phosphorylated (Tyr(747) and Tyr(759)) β(3) integrin cytoplasmic tail (CT) primarily by NMR, and our data demonstrate that under both aqueous and membrane-mimetic conditions, phosphorylation causes substantial conformational rearrangements. These changes originate from novel ionic interactions and revised phospholipid binding. Under aqueous conditions, the critical Tyr(747) phosphorylation prevents β(3)CT from binding to its heterodimer partner α(IIb)CT, thus likely maintaining an activated state of the receptor. This conclusion was tested in vivo and confirmed by integrin-dependent endothelial cells adhesion assay. Under membrane-mimetic conditions, phosphorylation results in a modified membrane embedding characterized by significant changes in the secondary structure pattern and the overall fold of β(3)CT. Collectively these data provide unique molecular insights into multiple regulatory roles of phosphorylation.
- Department of Pharmaceutical Sciences, School of Pharmacy, University of Connecticut, Storrs, Connecticut 06269, USA.
Organizational Affiliation:
Explore in 3D: Structure | Sequence Annotations | Validation Report | Predict Membrane
Biological Assembly 1
Explore in 3D: Structure | Sequence Annotations | Validation Report | Predict Membrane
Global Symmetry: Asymmetric - C1
Global Stoichiometry: Monomer - A1
Find Similar Assemblies
Biological assembly 1 assigned by authors.
Macromolecule Content
- Total Structure Weight: 7.92 kDa
- Atom Count: 403
- Modeled Residue Count: 47
- Deposited Residue Count: 67
- Unique protein chains: 1
Macromolecules
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Integrin beta-3 | 67 | Homo sapiens | Mutation(s): 0 Gene Names: ITGB3, GP3A Membrane Entity: Yes | 👁 Image | |
UniProt & NIH Common Fund Data Resources | |||||
PHAROS: P05106 GTEx: ENSG00000259207 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P05106 | ||||
Sequence AnnotationsExpand | |||||
Reference Sequence | |||||
Small Molecules
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| PTR Query on PTR | A | L-PEPTIDE LINKING | C9 H12 N O6 P | 👁 Image | TYR |
Experimental Data & Validation
Experimental Data
- Method: SOLUTION NMR
- Conformers Calculated: 100
- Conformers Submitted: 15
- Selection Criteria: structures with the lowest energy
Entry History
Deposition Data
- Released Date: 2011-10-05 Deposition Author(s): Deshmukh, L., Vinogradova, O.
Revision History (Full details and data files)
- Version 1.0: 2011-10-05
Type: Initial release - Version 1.1: 2013-06-19
Changes: Database references - Version 1.2: 2023-06-14
Changes: Database references, Derived calculations, Other - Version 1.3: 2024-11-20
Changes: Data collection, Database references, Structure summary
