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2MTP | pdb_00002mtp
The structure of Filamin repeat 21 bound to integrin
- PDB DOI: https://doi.org/10.2210/pdb2MTP/pdb
- BMRB: 25176
- Classification: PROTEIN BINDING/Cell Adhesion
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2014-08-28 Released: 2015-04-01
- Deposition Author(s): Liu, J., Qin, J.
Experimental Data Snapshot
- Method: SOLUTION NMR
- Conformers Calculated: 100
- Conformers Submitted: 20
- Selection Criteria: structures with the lowest energy
wwPDB Validation3D Report Full Report
Literature
- 👁 Image
Download Mendeley
Structural mechanism of integrin inactivation by filamin.
Liu, J., Das, M., Yang, J., Ithychanda, S.S., Yakubenko, V.P., Plow, E.F., Qin, J.(2015) Nat Struct Mol Biol 22: 383-389
- PubMed: 25849143 Search on PubMedSearch on PubMed Central
- DOI: https://doi.org/10.1038/nsmb.2999
- Primary Citation Related Structures:
2MTP - PubMed Abstract:
Activation of heterodimeric (αβ) integrin is crucial for regulating cell adhesion. Binding of talin to the cytoplasmic face of integrin activates the receptor, but how integrin is maintained in a resting state to counterbalance its activation has remained obscure. Here, we report the structure of the cytoplasmic domain of human integrin αIIbβ3 bound to its inhibitor, the immunoglobin repeat 21 of filamin A (FLNa-Ig21). The structure reveals an unexpected ternary complex in which FLNa-Ig21 not only binds to the C terminus of the integrin β3 cytoplasmic tail (CT), as previously predicted, but also engages N-terminal helices of αIIb and β3 CTs to stabilize an inter-CT clasp that helps restrain the integrin in a resting state. Combined with functional data, the structure reveals a new mechanism of filamin-mediated retention of inactive integrin, suggesting a new framework for understanding regulation of integrin activation and adhesion.
- Department of Molecular Cardiology, Lerner Research Institute, Cleveland Clinic, Cleveland, Ohio, USA.
Organizational Affiliation:
Biological Assembly 1
Explore in 3D: Structure | Sequence Annotations | Validation Report
Global Symmetry: Asymmetric - C1
Global Stoichiometry: Hetero 3-mer - A1B1C1
Find Similar Assemblies
Biological assembly 1 assigned by authors.
Macromolecule Content
- Total Structure Weight: 17.96 kDa
- Atom Count: 1,269
- Modeled Residue Count: 163
- Deposited Residue Count: 163
- Unique protein chains: 3
Macromolecules
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Filamin-A | 95 | Homo sapiens | Mutation(s): 0 Gene Names: FLNA, FLN, FLN1 | 👁 Image | |
UniProt & NIH Common Fund Data Resources | |||||
PHAROS: P21333 GTEx: ENSG00000196924 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P21333 | ||||
Sequence AnnotationsExpand | |||||
Reference Sequence | |||||
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Integrin alpha-IIb | 21 | Homo sapiens | Mutation(s): 0 Gene Names: ITGA2B, GP2B, ITGAB | 👁 Image | |
UniProt & NIH Common Fund Data Resources | |||||
PHAROS: P08514 GTEx: ENSG00000005961 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P08514 | ||||
Sequence AnnotationsExpand | |||||
Reference Sequence | |||||
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Integrin beta-3 | 47 | Homo sapiens | Mutation(s): 2 Gene Names: ITGB3, GP3A | 👁 Image | |
UniProt & NIH Common Fund Data Resources | |||||
PHAROS: P05106 GTEx: ENSG00000259207 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P05106 | ||||
Sequence AnnotationsExpand | |||||
Reference Sequence | |||||
Experimental Data & Validation
Experimental Data
- Method: SOLUTION NMR
- Conformers Calculated: 100
- Conformers Submitted: 20
- Selection Criteria: structures with the lowest energy
Entry History
Revision History (Full details and data files)
- Version 1.0: 2015-04-01
Type: Initial release - Version 1.1: 2015-07-01
Changes: Database references - Version 1.2: 2023-06-14
Changes: Data collection, Database references, Other - Version 1.3: 2024-05-15
Changes: Data collection, Database references
