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- Biological Assembly 1 (PDB - gz)
4ZUD | pdb_00004zud
Crystal Structure of Human Angiotensin Receptor in Complex with Inverse Agonist Olmesartan at 2.8A resolution.
- PDB DOI: https://doi.org/10.2210/pdb4ZUD/pdb
- Classification: MEMBRANE PROTEIN
- Organism(s): Escherichia coli, Homo sapiens
- Expression System: Spodoptera frugiperda
- Mutation(s): Yes
- Membrane Protein: Yes PDBTMMemProtMDmpstruc
- Deposited: 2015-05-15 Released: 2015-10-07
- Deposition Author(s): Zhang, H., Unal, H., Desnoyer, R., Han, G.W., Patel, N., Katritch, V., Karnik, S.S., Cherezov, V., Stevens, R.C., GPCR Network (GPCR)
- Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.234 (Depositor), 0.235 (DCC)
- R-Value Work: 0.194 (Depositor), 0.195 (DCC)
- R-Value Observed: 0.196 (Depositor)
Starting Model: experimental
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Literature
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Structural Basis for Ligand Recognition and Functional Selectivity at Angiotensin Receptor.
Zhang, H., Unal, H., Desnoyer, R., Han, G.W., Patel, N., Katritch, V., Karnik, S.S., Cherezov, V., Stevens, R.C.(2015) J Biological Chem 290: 29127-29139
- PubMed: 26420482 Search on PubMedSearch on PubMed Central
- DOI: https://doi.org/10.1074/jbc.M115.689000
- Primary Citation Related Structures:
4ZUD - PubMed Abstract:
Angiotensin II type 1 receptor (AT1R) is the primary blood pressure regulator. AT1R blockers (ARBs) have been widely used in clinical settings as anti-hypertensive drugs and share a similar chemical scaffold, although even minor variations can lead to distinct therapeutic efficacies toward cardiovascular etiologies. The structural basis for AT1R modulation by different peptide and non-peptide ligands has remained elusive. Here, we report the crystal structure of the human AT1R in complex with an inverse agonist olmesartan (Benicar(TM)), a highly potent anti-hypertensive drug. Olmesartan is anchored to the receptor primarily by the residues Tyr-35(1.39), Trp-84(2.60), and Arg-167(ECL2), similar to the antagonist ZD7155, corroborating a common binding mode of different ARBs. Using docking simulations and site-directed mutagenesis, we identified specific interactions between AT1R and different ARBs, including olmesartan derivatives with inverse agonist, neutral antagonist, or agonist activities. We further observed that the mutation N111(3.35)A in the putative sodium-binding site affects binding of the endogenous peptide agonist angiotensin II but not the β-arrestin-biased peptide TRV120027.
- From the Departments of Biological Sciences and Chemistry, Bridge Institute, University of Southern California, Los Angeles, California 90089 and.
- the Department of Molecular Cardiology, Lerner Research Institute of Cleveland Clinic, Cleveland, Ohio 44195.
- Chemistry, Bridge Institute, University of Southern California, Los Angeles, California 90089 and.
- From the Departments of Biological Sciences and.
- the Department of Molecular Cardiology, Lerner Research Institute of Cleveland Clinic, Cleveland, Ohio 44195 karniks@ccf.org.
- From the Departments of Biological Sciences and Chemistry, Bridge Institute, University of Southern California, Los Angeles, California 90089 and stevens@usc.edu.
Organizational Affiliation:
Explore in 3D: Structure | Sequence Annotations | Electron Density | Validation Report | Ligand Interaction (OLM) | Predict Membrane
Biological Assembly 1
Explore in 3D: Structure | Sequence Annotations | Electron Density | Validation Report | Ligand Interaction (OLM) | Predict Membrane
Global Symmetry: Asymmetric - C1
Global Stoichiometry: Monomer - A1
Find Similar Assemblies
Biological assembly 1 generated by PISA (software)
Macromolecule Content
- Total Structure Weight: 47.17 kDa
- Atom Count: 2,951
- Modeled Residue Count: 376
- Deposited Residue Count: 410
- Unique protein chains: 1
Macromolecules
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Chimera protein of Soluble cytochrome b562 and Type-1 angiotensin II receptor | 410 | Escherichia coli, Homo sapiens | Mutation(s): 3 Gene Names: cybC, AGTR1, AGTR1A, AGTR1B, AT2R1, AT2R1B Membrane Entity: Yes | 👁 Image | |
UniProt & NIH Common Fund Data Resources | |||||
PHAROS: P30556 GTEx: ENSG00000144891 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Groups | P0ABE7P30556 | ||||
Sequence AnnotationsExpand | |||||
Reference Sequence | |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| OLM Download:Ideal Coordinates CCD File | B [auth A] | Olmesartan C24 H26 N6 O3 VTRAEEWXHOVJFV-UHFFFAOYSA-N | 👁 Image | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.234 (Depositor), 0.235 (DCC)
- R-Value Work: 0.194 (Depositor), 0.195 (DCC)
- R-Value Observed: 0.196 (Depositor)
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 41.2 | α = 90 |
| b = 41.2 | β = 90 |
| c = 251.16 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XDS | data reduction |
| XSCALE | data scaling |
| PHASER | phasing |
Entry History
& Funding InformationDeposition Data
- Released Date: 2015-10-07 Deposition Author(s): Zhang, H., Unal, H., Desnoyer, R., Han, G.W., Patel, N., Katritch, V., Karnik, S.S., Cherezov, V., Stevens, R.C., GPCR Network (GPCR)
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | U54 GM094618 |
Revision History (Full details and data files)
- Version 1.0: 2015-10-07
Type: Initial release - Version 1.1: 2015-10-14
Changes: Database references - Version 1.2: 2015-12-16
Changes: Database references - Version 1.3: 2017-09-20
Changes: Author supporting evidence, Database references, Derived calculations - Version 1.4: 2019-12-25
Changes: Author supporting evidence - Version 1.5: 2023-09-27
Changes: Data collection, Database references, Refinement description - Version 1.6: 2024-11-06
Changes: Structure summary
