Powerful plugins and add-ons for hackers
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#
immunity
Here are 32 public repositories matching this topic...
SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.
nanopore cancer phase immunity hla-typing pacbio-data local-assembly loh haplotype reads-binning hla-sequence loss-of-heterozygosity genotype-frequency allelic-imbalance human-leukocyte-antigens
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- C++
Scripts and procedures for detecting positively selected genes and codons in primates
bioinformatics genomics genetics evolution computational-biology ensembl bioinformatics-pipeline comparative-genomics genomes genome-analysis sequence-alignment bioinformatics-analysis positive-selection bioinformatics-scripts immunity primates codeml
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- Perl
Web app with interactive forecasts based on correlations
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- Python
Structural interpretation of Killer cell immunoglobulin-like Receptors (KIR) haplotypes from raw short or long read sequences. It predicts the presence/absence of 16 KIR genes and then uses that to predict pairs of structural (gene-content and order) haplotypes.
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- Groovy
This repository contains an AWS CloudFormation templates that will create the infrastructure required to stand up a Kong Enterprise cluster of EC2 nodes with Brain/Immunity enabled. This template cannot be used to implement Kong as an ingress controller to a Kubernetes cluster.
aws cloudformation kong tyler aws-cloudformation brain immunity kong-cluster kong-enterprise tyler-technologies
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- Shell
Prediction and characterization of T cell response by improved T cell receptors to antigen specificity with interpretable deep learning
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- Python
Project and team formed in the #WirVsVirus Hackathon of the German Federal Government
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- HTML
Corona Immunity Certificate - blockchain secured proof. Speed up economic recovery by allowing Covid19-immune persons to move freely to work, helping others and reduce infection fears.
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- JavaScript
Cnidarian Mpeg1 protein sequences used to analyze gene diversity
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Prediction and characterization of T cell response by improved T cell receptors to antigen specificity with interpretable deep learning
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- Python
🌱🧬 Collection of scripts for the paper: "PAMP-triggered genetic reprogramming involves widespread alternative transcription initiation and an immediate transcription factor wave" (The Plant Cell 2022; PMID 35404429 🔗)
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- R
Web application for querying data on interferon-stimulated genes (ISGs)
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- Java
Analysis and implementation of the simple SIR model, the SIR model with vaccination, and the SIR model with vaccination and immunity terms.
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- MATLAB
VaxSim is a python package for simulating the spread of Foot and Mouth Disease (FMD) using a discrete compartmental model (SIRSV framework), along with control interventions such as periodic pulsed vaccination campaigns.
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- Python
Differential equation models that incorporate waning immunity
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- R
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