De novo clustering of long transcript reads into genes
- Updated
- Python
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pacbio-iso-seq
Here are 15 public repositories matching this topic...
A Python library to visualize and analyze long-read transcriptomes
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- Jupyter Notebook
Clair3-RNA - a long-read small variant caller for RNA sequencing data
rna-seq deep-learning nanopore rna variant-calling rna-editing rna-seq-pipeline ont long-read-sequencing pacbio-iso-seq
- Updated
- Python
De novo construction of isoforms from long-read data
transcriptomics oxford-nanopore bioinformatics-tool reference-free pacbio-iso-seq transcript-reconstruction annotation-free
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- Python
Long RNA-seq analysis workflow
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- Python
De novo clustering of long transcript reads into genes
bioinformatics clustering transcriptomics oxford-nanopore reference-free pacbio-iso-seq annotation-free
- Updated
- Rust
A Snakemake pipeline to go from raw .subreads.bam PacBio Iso-Seq to assembled mRNA isoforms (FASTA format)
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- Python
Process PacBio Sequel and Sequel II subread BAMs into CCS FASTQ files
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- Python
Genome assembly steps (Haliotis asinina)
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Build highly accurate transcripts from long-read RNA data
bioinformatics rna-seq bioinformatics-pipeline tgs rnaseq rna-seq-data pacbioreadsconnection sequencing-rna rna-seq-pipeline ont bioinformatics-tool pacbio-iso-seq
- Updated
- Python
Inter-sample analysis of SQANTI classifications
bioinformatics rna-seq liftover tgs pacbio rna-sequencing genome-browser pacbio-data bioinformatics-tool bioinformatics-visualization pacbio-iso-seq sqanti
- Updated
- R
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