rna-seq-data

Here are 46 public repositories matching this topic...

seandavi / awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

python bioinformatics clustering gene-expression data-visualization dimensionality-reduction awesome-list data-integration atac-seq single-cell rna-seq-data scrna-seq-data cell-differentiation gene-expression-profiles analysis-pipeline spatial-transcriptomics cell-populations rna-seq-experiments cell-clusters

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hbctraining / DGE_workshop

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workshop deseq2 rna-seq-data dge

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HTML

federicomarini / awesome-expression-browser

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😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎

bioinformatics gene-expression data-visualization awesome-list data-exploration atlas rna-seq-data gene-expression-profiles expression-browser humancellatlas

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AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.

python bam-files clustering graphical-interface pagerank bioinformatics-pipeline alternative-splicing command-line-tool splicing-quantification network-analysis pathway-analysis rna-seq-data scrna-seq-data cell-cycle cell-type-classification splicing-visualization fastq-anaysis single-cell-splicing marker-gene-analysis louvain-community-detection

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Python

federicomarini / GeneTonic

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Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail

gui r shiny reproducible-research gene-expression data-visualization bioconductor transcriptome user-friendly data-exploration transcriptomics rna-seq-analysis pathway-analysis rna-seq-data bioconductor-package functional-enrichment-analysis

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R

hbctraining / Intro-to-R-with-DGE

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workshop deseq2 rna-seq-data dge

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R

👁 proActiv

GoekeLab / proActiv

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Estimation of Promoter Activity from RNA-Seq data

r genomics promoter-activity rna-seq-data promoter-annotation alternative-promoters

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R

federicomarini / pcaExplorer

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pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data

r shiny reproducible-research bioconductor transcriptome user-friendly rna-seq-analysis principal-components rna-seq-data

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R

uc-bd2k / GREIN

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GREIN : GEO RNA-seq Experiments Interactive Navigator

processing rna-seq r geo graphical-interface gene-expression bioinformatics-pipeline interactive-analysis shiny-apps rna-seq-analysis rna-seq-data interactive-visualizations bioinformatics-analysis gene-expression-omnibus rna-seq-pipeline geo-data-processing grein

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HTML

nuno-agostinho / psichomics

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Interactive R package to quantify, analyse and visualise alternative splicing

tcga gene-expression bioconductor alternative-splicing gtex survival splicing-quantification data-analyses differential-splicing-analysis rna-seq-data sra differential-gene-expression vast-tools recount2

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R

egaffo / CirComPara

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🔬 A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data

bioinformatics rna-seq gene-expression bioinformatics-pipeline transcriptomics rna-seq-analysis circrna rna-seq-data circular-rna circseq rna-seq-pipeline circrnas

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R

Transipedia / dekupl

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Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.

bioinformatics rna-seq pipeline differential-expression rna-seq-data

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theislab / MetaMap

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The code and analyses accompanying the manuscript “MetaMap: An atlas of metatranscriptomic reads in human disease-related RNA-seq data”.

rna-seq-data metamap metatranscriptome

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HTML

DiseaseTranscriptomicsLab / markeR

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🧬 Toolkit for Evaluating Gene Sets as Phenotype Markers in R

gene-sets gene-expression r-package phenotypes transcriptomics rna-seq-data gene-signatures

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R

knowmics-lab / RNAdetector

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RNAdetector: a free user-friendly and stand-alone software for RNA-Seq data analysis

rna-seq-analysis pathway-analysis rna-seq-data ncrnas docker-desktop coding-rnas mirnas mrnas

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JavaScript

immunogenomics / amp_phase1_ra_viewer

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🌻 View single-cell RNA-seq and mass cytometry data in synovial tissues from patients with RA or OA.

data-science r data-visualization shiny-apps rna-seq-data single-cell-rna-seq cytof-data

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R

adeschen / SignatureHeatmap

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R package to create heatmaps using signature gene list and transcriptomic data

r heatmap classification rna-seq-data gene-list heatmap-visualization gene-signature

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R

bissessk / RNA-seq-Analysis-of-Control-and-NRDE2-depleted-Breast-Cancer-Cells

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Performed a differential gene expression analysis with RNA-seq that compares the expression in human control breast cancer cell lines with lines treated by silencing the NRDE2 gene. A Salmon + tximport + DESeq2 workflow was conducted to pursue this.

linux unix bioinformatics rna-seq r hpc rstudio ngs next-generation-sequencing bioinformatics-pipeline rnaseq deseq2 rna-sequencing salmon rna-seq-analysis rna-seq-data ngs-analysis rna-seq-pipeline salmon-deseq2 tximport

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Shell

MG-RAST / myM5NR

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M5NRv2 -- non-redundant protein and rRNA database integration

protein-sequences rna-seq-data

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Perl

wilkinsonlab / epigenomics_pipeline

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Epigenomics workflow system for the semi-automated analysis of NGS data

jupyter docker-image data-analysis chip-seq galaxy notebooks rna-seq-data docker-commands epigenomics-workflow brassica-rapa

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Jupyter Notebook

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⇱ rna-seq-data · GitHub Topics · GitHub

rna-seq-data

Here are 46 public repositories matching this topic...

seandavi / awesome-single-cell

hbctraining / DGE_workshop

federicomarini / awesome-expression-browser

nsalomonis / altanalyze

federicomarini / GeneTonic

hbctraining / Intro-to-R-with-DGE

GoekeLab / proActiv

federicomarini / pcaExplorer

uc-bd2k / GREIN

nuno-agostinho / psichomics

egaffo / CirComPara

Transipedia / dekupl

theislab / MetaMap

DiseaseTranscriptomicsLab / markeR

knowmics-lab / RNAdetector

immunogenomics / amp_phase1_ra_viewer

adeschen / SignatureHeatmap

bissessk / RNA-seq-Analysis-of-Control-and-NRDE2-depleted-Breast-Cancer-Cells

MG-RAST / myM5NR

wilkinsonlab / epigenomics_pipeline

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Add this topic to your repo