splicing-visualization

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nsalomonis / altanalyze

AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.

python bam-files clustering graphical-interface pagerank bioinformatics-pipeline alternative-splicing command-line-tool splicing-quantification network-analysis pathway-analysis rna-seq-data scrna-seq-data cell-cycle cell-type-classification splicing-visualization fastq-anaysis single-cell-splicing marker-gene-analysis louvain-community-detection

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Python

VCCRI / Ularcirc

Star

An R-shiny app that provides backsplice and canonical splicing analysis for both circular RNA (circRNA) and parental transcripts

rna-seq rna-seq-analysis circrna circular-rna sequencing-rna splicing-visualization splicing-analyses backsplicing

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R

ceredamatteo-lab / theRNAmars

Star

RNAMaRs: identification of multivalent RNA Motifs and cognate Regulators of alternative splicing

rna-binding-proteins splicing-visualization splicing-analyses multivalent-rna-motifs splicing

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C++

sivkri / splicing-events-calculation

Star

Calculate five major splicing events using rMATS followed by annotation

splicing-quantification splicing-event splicing-visualization splicing-analyses splicing-annotation splicing-event-filter splicing-detection splicing

Updated
Jupyter Notebook

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