wikipathways
Here are 25 public repositories matching this topic...
Python Client Package for WikiPathways
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- Python
WikiPathways Database
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- Shell
Project to convert content of WPRDF into nanopublications.
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- Java
Integration of pathway-related information from WikiPathways in BEL
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- Python
Ready-to-use curated genesets for cinaR
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- R
A compilation of pathway gene sets
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- Jupyter Notebook
Temporary repository of RDF of selected pathways from WikiPathways, supporting the Wikidata bot.
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- Java
Deposited R scripts allow to execute a complete RNA-seq Pipeline, starting from sequence reads (FASTQ files) to mapping/annotate the genome using a reference, to counts the number of reads for every gene. when raw counts are obtained, DESeq2 module permits to find differentially expressed genes (DEG) and to perform statistical analysis. The last…
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- Jupyter Notebook
WikiPathways Summit Planning
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Collect chemical reactions from a GPML file and look for matching Rhea equations.
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- JavaScript
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