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URL: https://www.rcsb.org/experimental/3FPU

⇱ Experiment: 3FPU

251,806
Structures from the PDB archive

1,068,577
Computed Structure Models (CSM)

3FPU | pdb_00003fpu

The crystallographic structure of the Complex between Evasin-1 and CCL3

X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	3FPR	pdb entry 3fpr

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	8.1	291	24% (w/v) PEG 3350, 200mM Ammonium sulfate, 100mM HEPES, pH 8.1, VAPOR DIFFUSION, SITTING DROP, temperature 291K

Crystal Properties
Matthews coefficient	Solvent content
2.47	50.19

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 104.384	α = 90
b = 104.384	β = 90
c = 104.384	γ = 90

Symmetry
Space Group	P 43 3 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	MAR CCD 165 mm	2006-02-17	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SLS BEAMLINE X06SA	0.976	SLS	X06SA

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Sym I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.76	50	99.9	0.09	13.7	40.4	19881	19881

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R-Sym I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.76	1.9	100	0.828	7.8

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	pdb entry 3fpr	1.76	50	18797	18797	1015	99.84	0.23398	0.23398	0.23133	0.23	0.28467	0.28	RANDOM	33.301

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	32.481
r_dihedral_angle_4_deg	16.595
r_dihedral_angle_3_deg	14.42
r_dihedral_angle_1_deg	6.566
r_scangle_it	4.29
r_scbond_it	2.981
r_mcangle_it	2.275
r_angle_refined_deg	1.639
r_mcbond_it	1.318
r_nbtor_refined	0.313

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	32.481
r_dihedral_angle_4_deg	16.595
r_dihedral_angle_3_deg	14.42
r_dihedral_angle_1_deg	6.566
r_scangle_it	4.29
r_scbond_it	2.981
r_mcangle_it	2.275
r_angle_refined_deg	1.639
r_mcbond_it	1.318
r_nbtor_refined	0.313
r_symmetry_vdw_refined	0.256
r_nbd_refined	0.21
r_symmetry_hbond_refined	0.189
r_xyhbond_nbd_refined	0.153
r_chiral_restr	0.123
r_bond_refined_d	0.016
r_gen_planes_refined	0.007

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1308
Nucleic Acid Atoms
Solvent Atoms	160
Heterogen Atoms	2

Software

Software
Software Name	Purpose
HKL-2000	data collection
AMoRE	phasing
REFMAC	refinement
DENZO	data reduction
SCALEPACK	data scaling

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